RDCNet: Instance segmentation with a minimalist recurrent residual network

Instance segmentation is a key step for quantitative microscopy. While several machine learning based methods have been proposed for this problem, most of them rely on computationally complex models that are trained on surrogate tasks. Building on recent developments towards end-to-end trainable instance segmentation, we propose a minimalist recurrent network called recurrent dilated convolutional network (RDCNet), consisting of a shared stacked dilated convolution (sSDC) layer that iteratively refines its output and thereby generates interpretable intermediate predictions. It is light-weight and has few critical hyperparameters, which can be related to physical aspects such as object size or density.We perform a sensitivity analysis of its main parameters and we demonstrate its versatility on 3 tasks with different imaging modalities: nuclear segmentation of H&E slides, of 3D anisotropic stacks from light-sheet fluorescence microscopy and leaf segmentation of top-view images of plants. It achieves state-of-the-art on 2 of the 3 datasets.Comment: Accepted at MICCAI-MLMI 2020 worksho

Instance Segmentation of Biological Images Using Harmonic Embeddings

We present a new instance segmentation approach tailored to biological images, where instances may correspond to individual cells, organisms or plant parts. Unlike instance segmentation for user photographs or road scenes, in biological data object instances may be particularly densely packed, the appearance variation may be particularly low, the processing power may be restricted, while, on the other hand, the variability of sizes of individual instances may be limited. The proposed approach successfully addresses these peculiarities. Our approach describes each object instance using an expectation of a limited number of sine waves with frequencies and phases adjusted to particular object sizes and densities. At train time, a fully-convolutional network is learned to predict the object embeddings at each pixel using a simple pixelwise regression loss, while at test time the instances are recovered using clustering in the embedding space. In the experiments, we show that our approach outperforms previous embedding-based instance segmentation approaches on a number of biological datasets, achieving state-of-the-art on a popular CVPPP benchmark. This excellent performance is combined with computational efficiency that is needed for deployment to domain specialists. The source code of the approach is available at https://github.com/kulikovv/harmonicComment: Accepted as oral to CVPR 202

Object Discovery with a Copy-Pasting GAN

We tackle the problem of object discovery, where objects are segmented for a given input image, and the system is trained without using any direct supervision whatsoever. A novel copy-pasting GAN framework is proposed, where the generator learns to discover an object in one image by compositing it into another image such that the discriminator cannot tell that the resulting image is fake. After carefully addressing subtle issues, such as preventing the generator from `cheating', this game results in the generator learning to select objects, as copy-pasting objects is most likely to fool the discriminator. The system is shown to work well on four very different datasets, including large object appearance variations in challenging cluttered backgrounds

Unsupervised Object Segmentation with Explicit Localization Module

In this paper, we propose a novel architecture that iteratively discovers and segments out the objects of a scene based on the image reconstruction quality. Different from other approaches, our model uses an explicit localization module that localizes objects of the scene based on the pixel-level reconstruction qualities at each iteration, where simpler objects tend to be reconstructed better at earlier iterations and thus are segmented out first. We show that our localization module improves the quality of the segmentation, especially on a challenging background

Improving Pixel Embedding Learning through Intermediate Distance Regression Supervision for Instance Segmentation

As a proposal-free approach, instance segmentation through pixel embedding learning and clustering is gaining more emphasis. Compared with bounding box refinement approaches, such as Mask R-CNN, it has potential advantages in handling complex shapes and dense objects. In this work, we propose a simple, yet highly effective, architecture for object-aware embedding learning. A distance regression module is incorporated into our architecture to generate seeds for fast clustering. At the same time, we show that the features learned by the distance regression module are able to promote the accuracy of learned object-aware embeddings significantly. By simply concatenating features of the distance regression module to the images as inputs of the embedding module, the mSBD scores on the CVPPP Leaf Segmentation Challenge can be further improved by more than 8% compared to the identical set-up without concatenation, yielding the best overall result amongst the leaderboard at CodaLab.Comment: ECCV 2020 Workshop: Computer Vision Problems in Plant Phenotyping (CVPPP 2020

Learning to Drive from Simulation without Real World Labels

Simulation can be a powerful tool for understanding machine learning systems and designing methods to solve real-world problems. Training and evaluating methods purely in simulation is often "doomed to succeed" at the desired task in a simulated environment, but the resulting models are incapable of operation in the real world. Here we present and evaluate a method for transferring a vision-based lane following driving policy from simulation to operation on a rural road without any real-world labels. Our approach leverages recent advances in image-to-image translation to achieve domain transfer while jointly learning a single-camera control policy from simulation control labels. We assess the driving performance of this method using both open-loop regression metrics, and closed-loop performance operating an autonomous vehicle on rural and urban roads

SOLO: Segmenting Objects by Locations

We present a new, embarrassingly simple approach to instance segmentation in images. Compared to many other dense prediction tasks, e.g., semantic segmentation, it is the arbitrary number of instances that have made instance segmentation much more challenging. In order to predict a mask for each instance, mainstream approaches either follow the 'detect-thensegment' strategy as used by Mask R-CNN, or predict category masks first then use clustering techniques to group pixels into individual instances. We view the task of instance segmentation from a completely new perspective by introducing the notion of "instance categories", which assigns categories to each pixel within an instance according to the instance's location and size, thus nicely converting instance mask segmentation into a classification-solvable problem. Now instance segmentation is decomposed into two classification tasks. We demonstrate a much simpler and flexible instance segmentation framework with strong performance, achieving on par accuracy with Mask R-CNN and outperforming recent singleshot instance segmenters in accuracy. We hope that this very simple and strong framework can serve as a baseline for many instance-level recognition tasks besides instance segmentation.Comment: Accepted to Proc. Eur. Conf. Computer Vision (ECCV) 2020. Code is available at https://git.io/AdelaiDe

Object Discovery in Videos as Foreground Motion Clustering

We consider the problem of providing dense segmentation masks for object discovery in videos. We formulate the object discovery problem as foreground motion clustering, where the goal is to cluster foreground pixels in videos into different objects. We introduce a novel pixel-trajectory recurrent neural network that learns feature embeddings of foreground pixel trajectories linked across time. By clustering the pixel trajectories using the learned feature embeddings, our method establishes correspondences between foreground object masks across video frames. To demonstrate the effectiveness of our framework for object discovery, we conduct experiments on commonly used datasets for motion segmentation, where we achieve state-of-the-art performance

Rethinking Task and Metrics of Instance Segmentation on 3D Point Clouds

Instance segmentation on 3D point clouds is one of the most extensively researched areas toward the realization of autonomous cars and robots. Certain existing studies have split input point clouds into small regions such as 1m x 1m; one reason for this is that models in the studies cannot consume a large number of points because of the large space complexity. However, because such small regions occasionally include a very small number of instances belonging to the same class, an evaluation using existing metrics such as mAP is largely affected by the category recognition performance. To address these problems, we propose a new method with space complexity O(Np) such that large regions can be consumed, as well as novel metrics for tasks that are independent of the categories or size of the inputs. Our method learns a mapping from input point clouds to an embedding space, where the embeddings form clusters for each instance and distinguish instances using these clusters during testing. Our method achieves state-of-the-art performance using both existing and the proposed metrics. Moreover, we show that our new metric can evaluate the performance of a task without being affected by any other condition.Comment: The 4th Workshop on Geometry Meets Deep Learning (ICCV Workshop 2019

Learning Gaussian Instance Segmentation in Point Clouds

This paper presents a novel method for instance segmentation of 3D point clouds. The proposed method is called Gaussian Instance Center Network (GICN), which can approximate the distributions of instance centers scattered in the whole scene as Gaussian center heatmaps. Based on the predicted heatmaps, a small number of center candidates can be easily selected for the subsequent predictions with efficiency, including i) predicting the instance size of each center to decide a range for extracting features, ii) generating bounding boxes for centers, and iii) producing the final instance masks. GICN is a single-stage, anchor-free, and end-to-end architecture that is easy to train and efficient to perform inference. Benefited from the center-dictated mechanism with adaptive instance size selection, our method achieves state-of-the-art performance in the task of 3D instance segmentation on ScanNet and S3DIS datasets