GOGGLES: Automatic Image Labeling with Affinity Coding

Generating large labeled training data is becoming the biggest bottleneck in building and deploying supervised machine learning models. Recently, the data programming paradigm has been proposed to reduce the human cost in labeling training data. However, data programming relies on designing labeling functions which still requires significant domain expertise. Also, it is prohibitively difficult to write labeling functions for image datasets as it is hard to express domain knowledge using raw features for images (pixels). We propose affinity coding, a new domain-agnostic paradigm for automated training data labeling. The core premise of affinity coding is that the affinity scores of instance pairs belonging to the same class on average should be higher than those of pairs belonging to different classes, according to some affinity functions. We build the GOGGLES system that implements affinity coding for labeling image datasets by designing a novel set of reusable affinity functions for images, and propose a novel hierarchical generative model for class inference using a small development set. We compare GOGGLES with existing data programming systems on 5 image labeling tasks from diverse domains. GOGGLES achieves labeling accuracies ranging from a minimum of 71% to a maximum of 98% without requiring any extensive human annotation. In terms of end-to-end performance, GOGGLES outperforms the state-of-the-art data programming system Snuba by 21% and a state-of-the-art few-shot learning technique by 5%, and is only 7% away from the fully supervised upper bound.Comment: Published at 2020 ACM SIGMOD International Conference on Management of Dat

Machine learning methods for histopathological image analysis

Abundant accumulation of digital histopathological images has led to the increased demand for their analysis, such as computer-aided diagnosis using machine learning techniques. However, digital pathological images and related tasks have some issues to be considered. In this mini-review, we introduce the application of digital pathological image analysis using machine learning algorithms, address some problems specific to such analysis, and propose possible solutions.Comment: 23 pages, 4 figure

Guided Proofreading of Automatic Segmentations for Connectomics

Automatic cell image segmentation methods in connectomics produce merge and split errors, which require correction through proofreading. Previous research has identified the visual search for these errors as the bottleneck in interactive proofreading. To aid error correction, we develop two classifiers that automatically recommend candidate merges and splits to the user. These classifiers use a convolutional neural network (CNN) that has been trained with errors in automatic segmentations against expert-labeled ground truth. Our classifiers detect potentially-erroneous regions by considering a large context region around a segmentation boundary. Corrections can then be performed by a user with yes/no decisions, which reduces variation of information 7.5x faster than previous proofreading methods. We also present a fully-automatic mode that uses a probability threshold to make merge/split decisions. Extensive experiments using the automatic approach and comparing performance of novice and expert users demonstrate that our method performs favorably against state-of-the-art proofreading methods on different connectomics datasets.Comment: Supplemental material available at http://rhoana.org/guidedproofreading/supplemental.pd