17,506 research outputs found
Implementing a Portable Clinical NLP System with a Common Data Model - a Lisp Perspective
This paper presents a Lisp architecture for a portable NLP system, termed
LAPNLP, for processing clinical notes. LAPNLP integrates multiple standard,
customized and in-house developed NLP tools. Our system facilitates portability
across different institutions and data systems by incorporating an enriched
Common Data Model (CDM) to standardize necessary data elements. It utilizes
UMLS to perform domain adaptation when integrating generic domain NLP tools. It
also features stand-off annotations that are specified by positional reference
to the original document. We built an interval tree based search engine to
efficiently query and retrieve the stand-off annotations by specifying
positional requirements. We also developed a utility to convert an inline
annotation format to stand-off annotations to enable the reuse of clinical text
datasets with inline annotations. We experimented with our system on several
NLP facilitated tasks including computational phenotyping for lymphoma patients
and semantic relation extraction for clinical notes. These experiments
showcased the broader applicability and utility of LAPNLP.Comment: 6 pages, accepted by IEEE BIBM 2018 as regular pape
From Frequency to Meaning: Vector Space Models of Semantics
Computers understand very little of the meaning of human language. This
profoundly limits our ability to give instructions to computers, the ability of
computers to explain their actions to us, and the ability of computers to
analyse and process text. Vector space models (VSMs) of semantics are beginning
to address these limits. This paper surveys the use of VSMs for semantic
processing of text. We organize the literature on VSMs according to the
structure of the matrix in a VSM. There are currently three broad classes of
VSMs, based on term-document, word-context, and pair-pattern matrices, yielding
three classes of applications. We survey a broad range of applications in these
three categories and we take a detailed look at a specific open source project
in each category. Our goal in this survey is to show the breadth of
applications of VSMs for semantics, to provide a new perspective on VSMs for
those who are already familiar with the area, and to provide pointers into the
literature for those who are less familiar with the field
When Things Matter: A Data-Centric View of the Internet of Things
With the recent advances in radio-frequency identification (RFID), low-cost
wireless sensor devices, and Web technologies, the Internet of Things (IoT)
approach has gained momentum in connecting everyday objects to the Internet and
facilitating machine-to-human and machine-to-machine communication with the
physical world. While IoT offers the capability to connect and integrate both
digital and physical entities, enabling a whole new class of applications and
services, several significant challenges need to be addressed before these
applications and services can be fully realized. A fundamental challenge
centers around managing IoT data, typically produced in dynamic and volatile
environments, which is not only extremely large in scale and volume, but also
noisy, and continuous. This article surveys the main techniques and
state-of-the-art research efforts in IoT from data-centric perspectives,
including data stream processing, data storage models, complex event
processing, and searching in IoT. Open research issues for IoT data management
are also discussed
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