Scalable Gaussian Processes with Billions of Inducing Inputs via Tensor Train Decomposition

We propose a method (TT-GP) for approximate inference in Gaussian Process (GP) models. We build on previous scalable GP research including stochastic variational inference based on inducing inputs, kernel interpolation, and structure exploiting algebra. The key idea of our method is to use Tensor Train decomposition for variational parameters, which allows us to train GPs with billions of inducing inputs and achieve state-of-the-art results on several benchmarks. Further, our approach allows for training kernels based on deep neural networks without any modifications to the underlying GP model. A neural network learns a multidimensional embedding for the data, which is used by the GP to make the final prediction. We train GP and neural network parameters end-to-end without pretraining, through maximization of GP marginal likelihood. We show the efficiency of the proposed approach on several regression and classification benchmark datasets including MNIST, CIFAR-10, and Airline

Algorithmic Linearly Constrained Gaussian Processes

We algorithmically construct multi-output Gaussian process priors which satisfy linear differential equations. Our approach attempts to parametrize all solutions of the equations using Gr\"obner bases. If successful, a push forward Gaussian process along the paramerization is the desired prior. We consider several examples from physics, geomathematics and control, among them the full inhomogeneous system of Maxwell's equations. By bringing together stochastic learning and computer algebra in a novel way, we combine noisy observations with precise algebraic computations.Comment: NIPS 201

Scalable Multi-Task Gaussian Process Tensor Regression for Normative Modeling of Structured Variation in Neuroimaging Data

Most brain disorders are very heterogeneous in terms of their underlying biology and developing analysis methods to model such heterogeneity is a major challenge. A promising approach is to use probabilistic regression methods to estimate normative models of brain function using (f)MRI data then use these to map variation across individuals in clinical populations (e.g., via anomaly detection). To fully capture individual differences, it is crucial to statistically model the patterns of correlation across different brain regions and individuals. However, this is very challenging for neuroimaging data because of high-dimensionality and highly structured patterns of correlation across multiple axes. Here, we propose a general and flexible multi-task learning framework to address this problem. Our model uses a tensor-variate Gaussian process in a Bayesian mixed-effects model and makes use of Kronecker algebra and a low-rank approximation to scale efficiently to multi-way neuroimaging data at the whole brain level. On a publicly available clinical fMRI dataset, we show that our computationally affordable approach substantially improves detection sensitivity over both a mass-univariate normative model and a classifier that --unlike our approach-- has full access to the clinical labels

Adaptive Tensor Learning with Tensor Networks

Tensor decomposition techniques have shown great successes in machine learning and data science by extending classical algorithms based on matrix factorization to multi-modal and multi-way data. However, there exist many tensor decomposition models~(CP, Tucker, Tensor Train, etc.) and the rank of such a decomposition is typically a collection of integers rather than a unique number, making model and hyper-parameter selection a tedious and costly task. At the same time, tensor network methods are powerful tools developed in the physics community which have recently shown their potential for machine learning applications and offer a unifying view of the various tensor decomposition models. In this paper, we leverage the tensor network formalism to develop a generic and efficient adaptive algorithm for tensor learning. Our method is based on a simple greedy approach optimizing a differentiable loss function starting from a rank one tensor and successively identifying the most promising tensor network edges for small rank increments. Our algorithm can adaptively identify tensor network structures with small number of parameters that effectively optimize the objective function from data. The framework we introduce is very broad and encompasses many common tensor optimization problems. Experiments on tensor decomposition and tensor completion tasks with both synthetic and real world data demonstrate the effectiveness of the proposed algorithm

SKIing on Simplices: Kernel Interpolation on the Permutohedral Lattice for Scalable Gaussian Processes

State-of-the-art methods for scalable Gaussian processes use iterative algorithms, requiring fast matrix vector multiplies (MVMs) with the covariance kernel. The Structured Kernel Interpolation (SKI) framework accelerates these MVMs by performing efficient MVMs on a grid and interpolating back to the original space. In this work, we develop a connection between SKI and the permutohedral lattice used for high-dimensional fast bilateral filtering. Using a sparse simplicial grid instead of a dense rectangular one, we can perform GP inference exponentially faster in the dimension than SKI. Our approach, Simplex-GP, enables scaling SKI to high dimensions, while maintaining strong predictive performance. We additionally provide a CUDA implementation of Simplex-GP, which enables significant GPU acceleration of MVM based inference.Comment: International Conference on Machine Learning (ICML), 202

Hierarchical Inducing Point Gaussian Process for Inter-domain Observations

We examine the general problem of inter-domain Gaussian Processes (GPs): problems where the GP realization and the noisy observations of that realization lie on different domains. When the mapping between those domains is linear, such as integration or differentiation, inference is still closed form. However, many of the scaling and approximation techniques that our community has developed do not apply to this setting. In this work, we introduce the hierarchical inducing point GP (HIP-GP), a scalable inter-domain GP inference method that enables us to improve the approximation accuracy by increasing the number of inducing points to the millions. HIP-GP, which relies on inducing points with grid structure and a stationary kernel assumption, is suitable for low-dimensional problems. In developing HIP-GP, we introduce (1) a fast whitening strategy, and (2) a novel preconditioner for conjugate gradients which can be helpful in general GP settings. Our code is available at https: //github.com/cunningham-lab/hipgp

Alternating linear scheme in a Bayesian framework for low-rank tensor approximation

Multiway data often naturally occurs in a tensorial format which can be approximately represented by a low-rank tensor decomposition. This is useful because complexity can be significantly reduced and the treatment of large-scale data sets can be facilitated. In this paper, we find a low-rank representation for a given tensor by solving a Bayesian inference problem. This is achieved by dividing the overall inference problem into sub-problems where we sequentially infer the posterior distribution of one tensor decomposition component at a time. This leads to a probabilistic interpretation of the well-known iterative algorithm alternating linear scheme (ALS). In this way, the consideration of measurement noise is enabled, as well as the incorporation of application-specific prior knowledge and the uncertainty quantification of the low-rank tensor estimate. To compute the low-rank tensor estimate from the posterior distributions of the tensor decomposition components, we present an algorithm that performs the unscented transform in tensor train format

Lower and Upper Bounds on the VC-Dimension of Tensor Network Models

Tensor network methods have been a key ingredient of advances in condensed matter physics and have recently sparked interest in the machine learning community for their ability to compactly represent very high-dimensional objects. Tensor network methods can for example be used to efficiently learn linear models in exponentially large feature spaces [Stoudenmire and Schwab, 2016]. In this work, we derive upper and lower bounds on the VC dimension and pseudo-dimension of a large class of tensor network models for classification, regression and completion. Our upper bounds hold for linear models parameterized by arbitrary tensor network structures, and we derive lower bounds for common tensor decomposition models~(CP, Tensor Train, Tensor Ring and Tucker) showing the tightness of our general upper bound. These results are used to derive a generalization bound which can be applied to classification with low rank matrices as well as linear classifiers based on any of the commonly used tensor decomposition models. As a corollary of our results, we obtain a bound on the VC dimension of the matrix product state classifier introduced in [Stoudenmire and Schwab, 2016] as a function of the so-called bond dimension~(i.e. tensor train rank), which answers an open problem listed by Cirac, Garre-Rubio and P\'erez-Garc\'ia in [Cirac et al., 2019]

Functional Variational Bayesian Neural Networks

Variational Bayesian neural networks (BNNs) perform variational inference over weights, but it is difficult to specify meaningful priors and approximate posteriors in a high-dimensional weight space. We introduce functional variational Bayesian neural networks (fBNNs), which maximize an Evidence Lower BOund (ELBO) defined directly on stochastic processes, i.e. distributions over functions. We prove that the KL divergence between stochastic processes equals the supremum of marginal KL divergences over all finite sets of inputs. Based on this, we introduce a practical training objective which approximates the functional ELBO using finite measurement sets and the spectral Stein gradient estimator. With fBNNs, we can specify priors entailing rich structures, including Gaussian processes and implicit stochastic processes. Empirically, we find fBNNs extrapolate well using various structured priors, provide reliable uncertainty estimates, and scale to large datasets.Comment: ICLR 201

Kernel methods through the roof: handling billions of points efficiently

Kernel methods provide an elegant and principled approach to nonparametric learning, but so far could hardly be used in large scale problems, since na\"ive implementations scale poorly with data size. Recent advances have shown the benefits of a number of algorithmic ideas, for example combining optimization, numerical linear algebra and random projections. Here, we push these efforts further to develop and test a solver that takes full advantage of GPU hardware. Towards this end, we designed a preconditioned gradient solver for kernel methods exploiting both GPU acceleration and parallelization with multiple GPUs, implementing out-of-core variants of common linear algebra operations to guarantee optimal hardware utilization. Further, we optimize the numerical precision of different operations and maximize efficiency of matrix-vector multiplications. As a result we can experimentally show dramatic speedups on datasets with billions of points, while still guaranteeing state of the art performance. Additionally, we make our software available as an easy to use library.Comment: 33 pages, 7 figures, NeurIPS 202