13,706 research outputs found
Formal executable descriptions of biological systems
The similarities between systems of living entities and systems of concurrent processes may support biological experiments in silico. Process calculi offer a formal framework to describe biological systems, as well as to analyse their behaviour, both from a qualitative and a quantitative point of view. A couple of little examples help us in showing how this can be done. We mainly focus our attention on the qualitative and quantitative aspects of the considered biological systems, and briefly illustrate which kinds of analysis are possible. We use a known stochastic calculus for the first example. We then present some statistics collected by repeatedly running the specification, that turn out to agree with those obtained by experiments in vivo. Our second example motivates a richer calculus. Its stochastic extension requires a non trivial machinery to faithfully reflect the real dynamic behaviour of biological systems
Modeling of Phenomena and Dynamic Logic of Phenomena
Modeling of complex phenomena such as the mind presents tremendous
computational complexity challenges. Modeling field theory (MFT) addresses
these challenges in a non-traditional way. The main idea behind MFT is to match
levels of uncertainty of the model (also, problem or theory) with levels of
uncertainty of the evaluation criterion used to identify that model. When a
model becomes more certain, then the evaluation criterion is adjusted
dynamically to match that change to the model. This process is called the
Dynamic Logic of Phenomena (DLP) for model construction and it mimics processes
of the mind and natural evolution. This paper provides a formal description of
DLP by specifying its syntax, semantics, and reasoning system. We also outline
links between DLP and other logical approaches. Computational complexity issues
that motivate this work are presented using an example of polynomial models
Kolmogorov Complexity in perspective. Part II: Classification, Information Processing and Duality
We survey diverse approaches to the notion of information: from Shannon
entropy to Kolmogorov complexity. Two of the main applications of Kolmogorov
complexity are presented: randomness and classification. The survey is divided
in two parts published in a same volume. Part II is dedicated to the relation
between logic and information system, within the scope of Kolmogorov
algorithmic information theory. We present a recent application of Kolmogorov
complexity: classification using compression, an idea with provocative
implementation by authors such as Bennett, Vitanyi and Cilibrasi. This stresses
how Kolmogorov complexity, besides being a foundation to randomness, is also
related to classification. Another approach to classification is also
considered: the so-called "Google classification". It uses another original and
attractive idea which is connected to the classification using compression and
to Kolmogorov complexity from a conceptual point of view. We present and unify
these different approaches to classification in terms of Bottom-Up versus
Top-Down operational modes, of which we point the fundamental principles and
the underlying duality. We look at the way these two dual modes are used in
different approaches to information system, particularly the relational model
for database introduced by Codd in the 70's. This allows to point out diverse
forms of a fundamental duality. These operational modes are also reinterpreted
in the context of the comprehension schema of axiomatic set theory ZF. This
leads us to develop how Kolmogorov's complexity is linked to intensionality,
abstraction, classification and information system.Comment: 43 page
Geospatial Narratives and their Spatio-Temporal Dynamics: Commonsense Reasoning for High-level Analyses in Geographic Information Systems
The modelling, analysis, and visualisation of dynamic geospatial phenomena
has been identified as a key developmental challenge for next-generation
Geographic Information Systems (GIS). In this context, the envisaged
paradigmatic extensions to contemporary foundational GIS technology raises
fundamental questions concerning the ontological, formal representational, and
(analytical) computational methods that would underlie their spatial
information theoretic underpinnings.
We present the conceptual overview and architecture for the development of
high-level semantic and qualitative analytical capabilities for dynamic
geospatial domains. Building on formal methods in the areas of commonsense
reasoning, qualitative reasoning, spatial and temporal representation and
reasoning, reasoning about actions and change, and computational models of
narrative, we identify concrete theoretical and practical challenges that
accrue in the context of formal reasoning about `space, events, actions, and
change'. With this as a basis, and within the backdrop of an illustrated
scenario involving the spatio-temporal dynamics of urban narratives, we address
specific problems and solutions techniques chiefly involving `qualitative
abstraction', `data integration and spatial consistency', and `practical
geospatial abduction'. From a broad topical viewpoint, we propose that
next-generation dynamic GIS technology demands a transdisciplinary scientific
perspective that brings together Geography, Artificial Intelligence, and
Cognitive Science.
Keywords: artificial intelligence; cognitive systems; human-computer
interaction; geographic information systems; spatio-temporal dynamics;
computational models of narrative; geospatial analysis; geospatial modelling;
ontology; qualitative spatial modelling and reasoning; spatial assistance
systemsComment: ISPRS International Journal of Geo-Information (ISSN 2220-9964);
Special Issue on: Geospatial Monitoring and Modelling of Environmental
Change}. IJGI. Editor: Duccio Rocchini. (pre-print of article in press
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