55,264 research outputs found
A Compact Representation of Histopathology Images using Digital Stain Separation & Frequency-Based Encoded Local Projections
In recent years, histopathology images have been increasingly used as a
diagnostic tool in the medical field. The process of accurately diagnosing a
biopsy sample requires significant expertise in the field, and as such can be
time-consuming and is prone to uncertainty and error. With the advent of
digital pathology, using image recognition systems to highlight problem areas
or locate similar images can aid pathologists in making quick and accurate
diagnoses. In this paper, we specifically consider the encoded local
projections (ELP) algorithm, which has previously shown some success as a tool
for classification and recognition of histopathology images. We build on the
success of the ELP algorithm as a means for image classification and
recognition by proposing a modified algorithm which captures the local
frequency information of the image. The proposed algorithm estimates local
frequencies by quantifying the changes in multiple projections in local windows
of greyscale images. By doing so we remove the need to store the full
projections, thus significantly reducing the histogram size, and decreasing
computation time for image retrieval and classification tasks. Furthermore, we
investigate the effectiveness of applying our method to histopathology images
which have been digitally separated into their hematoxylin and eosin stain
components. The proposed algorithm is tested on the publicly available invasive
ductal carcinoma (IDC) data set. The histograms are used to train an SVM to
classify the data. The experiments showed that the proposed method outperforms
the original ELP algorithm in image retrieval tasks. On classification tasks,
the results are found to be comparable to state-of-the-art deep learning
methods and better than many handcrafted features from the literature.Comment: Accepted for publication in the International Conference on Image
Analysis and Recognition (ICIAR 2019
MinMax Radon Barcodes for Medical Image Retrieval
Content-based medical image retrieval can support diagnostic decisions by
clinical experts. Examining similar images may provide clues to the expert to
remove uncertainties in his/her final diagnosis. Beyond conventional feature
descriptors, binary features in different ways have been recently proposed to
encode the image content. A recent proposal is "Radon barcodes" that employ
binarized Radon projections to tag/annotate medical images with content-based
binary vectors, called barcodes. In this paper, MinMax Radon barcodes are
introduced which are superior to "local thresholding" scheme suggested in the
literature. Using IRMA dataset with 14,410 x-ray images from 193 different
classes, the advantage of using MinMax Radon barcodes over \emph{thresholded}
Radon barcodes are demonstrated. The retrieval error for direct search drops by
more than 15\%. As well, SURF, as a well-established non-binary approach, and
BRISK, as a recent binary method are examined to compare their results with
MinMax Radon barcodes when retrieving images from IRMA dataset. The results
demonstrate that MinMax Radon barcodes are faster and more accurate when
applied on IRMA images.Comment: To appear in proceedings of the 12th International Symposium on
Visual Computing, December 12-14, 2016, Las Vegas, Nevada, US
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