Nematic - Isotropic Transition in Porous Media - a Monte Carlo Study

We propose a lattice model to simulate the influence of porous medium on the Nematic - Isotropic transition of liquid crystal confined to the pores. The effects of pore size and pore connectivity are modelled through a disorder parameter. Monte Carlo calculations based on the model leads to results that compare well with experiments.Comment: 11 pages; 4 figure

Interconnectivity of habitats in soil:combining X-ray micro tomography and thin sectioning to reveal fungal-soil structure interactions

The extreme heterogeneity and interconnectivity of the 3-dimensional pore space within soil makes it a unique habitat for the diverse microbial population and has a pivotal role in microbial interactions. Manipulation and quantification of the 3-dimensional pore space and the spatial distribution of micro-organisms is therefore essential if we are to fully understand microbial interactions. Here we pack soil microcosms at different bulk-densities to manipulate soil structure and use x-ray micro tomography and soil thin sections to analyse the effect on the connectivity of the pore volume and on fungal exploration

Modelling and quantifying the effect of heterogeneity in soil physical conditions on fungal growth

Despite the importance of fungi in soil ecosystem services, a theoretical framework that links soil management strategies with fungal ecology is still lacking. One of the key challenges is to understand how the complex geometrical shape of pores in soil affects fungal spread and species interaction. Progress in this area has long been hampered by a lack of experimental techniques for quantification. In this paper we use X-ray computed tomography to quantify and characterize the pore geometry at microscopic scales (30 μm) that are relevant for fungal spread in soil. We analysed the pore geometry for replicated samples with bulk-densities ranging from 1.2–1.6 g/cm3. The bulk-density of soils significantly affected the total volume, mean pore diameter and connectivity of the pore volume. A previously described fungal growth model comprising a minimal set of physiological processes required to produce a range of phenotypic responses was used to analyse the effect of these geometric descriptors on fungal invasion, and we showed that the degree and rate of fungal invasion was affected mainly by pore volume and pore connectivity. The presented experimental and theoretical framework is a significant first step towards understanding how environmental change and soil management impact on fungal diversity in soils

Volume, Surface, Connectivity and Size Distribution of Soil Pore Space in CT Images: Comparison of Samples at Different Depths from Nearby Natural and Tillage Areas

The study of soil structure, i.e., the pores, is of vital importance in different fields of science and technology. Total pore volume (porosity), pore surface, pore connectivity and pore size distribution are some (probably the most important) of the geometric measurements of pore space. The technology of X-ray computed tomography allows us to obtain 3D images of the inside of a soil sample enabling study of the pores without disturbing the samples. In this work we performed a set of geometrical measures, some of them from mathematical morphology, to assess and quantify any possible difference that tillage may have caused on the soil. We compared samples from tilled soil with samples from a soil with natural vegetation taken in a very close area. Our results show that the main differences between these two groups of samples are total surface area and pore connectivity per unit pore volume