Analysis, classification and comparison of scheduling techniques for software transactional memories

Transactional Memory (TM) is a practical programming paradigm for developing concurrent applications. Performance is a critical factor for TM implementations, and various studies demonstrated that specialised transaction/thread scheduling support is essential for implementing performance-effective TM systems. After one decade of research, this article reviews the wide variety of scheduling techniques proposed for Software Transactional Memories. Based on peculiarities and differences of the adopted scheduling strategies, we propose a classification of the existing techniques, and we discuss the specific characteristics of each technique. Also, we analyse the results of previous evaluation and comparison studies, and we present the results of a new experimental study encompassing techniques based on different scheduling strategies. Finally, we identify potential strengths and weaknesses of the different techniques, as well as the issues that require to be further investigated

Preemptive Thread Block Scheduling with Online Structural Runtime Prediction for Concurrent GPGPU Kernels

Recent NVIDIA Graphics Processing Units (GPUs) can execute multiple kernels concurrently. On these GPUs, the thread block scheduler (TBS) uses the FIFO policy to schedule their thread blocks. We show that FIFO leaves performance to chance, resulting in significant loss of performance and fairness. To improve performance and fairness, we propose use of the preemptive Shortest Remaining Time First (SRTF) policy instead. Although SRTF requires an estimate of runtime of GPU kernels, we show that such an estimate of the runtime can be easily obtained using online profiling and exploiting a simple observation on GPU kernels' grid structure. Specifically, we propose a novel Structural Runtime Predictor. Using a simple Staircase model of GPU kernel execution, we show that the runtime of a kernel can be predicted by profiling only the first few thread blocks. We evaluate an online predictor based on this model on benchmarks from ERCBench, and find that it can estimate the actual runtime reasonably well after the execution of only a single thread block. Next, we design a thread block scheduler that is both concurrent kernel-aware and uses this predictor. We implement the SRTF policy and evaluate it on two-program workloads from ERCBench. SRTF improves STP by 1.18x and ANTT by 2.25x over FIFO. When compared to MPMax, a state-of-the-art resource allocation policy for concurrent kernels, SRTF improves STP by 1.16x and ANTT by 1.3x. To improve fairness, we also propose SRTF/Adaptive which controls resource usage of concurrently executing kernels to maximize fairness. SRTF/Adaptive improves STP by 1.12x, ANTT by 2.23x and Fairness by 2.95x compared to FIFO. Overall, our implementation of SRTF achieves system throughput to within 12.64% of Shortest Job First (SJF, an oracle optimal scheduling policy), bridging 49% of the gap between FIFO and SJF.Comment: 14 pages, full pre-review version of PACT 2014 poste

Synapse: Synthetic Application Profiler and Emulator

We introduce Synapse motivated by the needs to estimate and emulate workload execution characteristics on high-performance and distributed heterogeneous resources. Synapse has a platform independent application profiler, and the ability to emulate profiled workloads on a variety of heterogeneous resources. Synapse is used as a proxy application (or "representative application") for real workloads, with the added advantage that it can be tuned at arbitrary levels of granularity in ways that are simply not possible using real applications. Experiments show that automated profiling using Synapse represents application characteristics with high fidelity. Emulation using Synapse can reproduce the application behavior in the original runtime environment, as well as reproducing properties when used in a different run-time environments

Forecasting the cost of processing multi-join queries via hashing for main-memory databases (Extended version)

Database management systems (DBMSs) carefully optimize complex multi-join queries to avoid expensive disk I/O. As servers today feature tens or hundreds of gigabytes of RAM, a significant fraction of many analytic databases becomes memory-resident. Even after careful tuning for an in-memory environment, a linear disk I/O model such as the one implemented in PostgreSQL may make query response time predictions that are up to 2X slower than the optimal multi-join query plan over memory-resident data. This paper introduces a memory I/O cost model to identify good evaluation strategies for complex query plans with multiple hash-based equi-joins over memory-resident data. The proposed cost model is carefully validated for accuracy using three different systems, including an Amazon EC2 instance, to control for hardware-specific differences. Prior work in parallel query evaluation has advocated right-deep and bushy trees for multi-join queries due to their greater parallelization and pipelining potential. A surprising finding is that the conventional wisdom from shared-nothing disk-based systems does not directly apply to the modern shared-everything memory hierarchy. As corroborated by our model, the performance gap between the optimal left-deep and right-deep query plan can grow to about 10X as the number of joins in the query increases.Comment: 15 pages, 8 figures, extended version of the paper to appear in SoCC'1

High-throughput Binding Affinity Calculations at Extreme Scales

Resistance to chemotherapy and molecularly targeted therapies is a major factor in limiting the effectiveness of cancer treatment. In many cases, resistance can be linked to genetic changes in target proteins, either pre-existing or evolutionarily selected during treatment. Key to overcoming this challenge is an understanding of the molecular determinants of drug binding. Using multi-stage pipelines of molecular simulations we can gain insights into the binding free energy and the residence time of a ligand, which can inform both stratified and personal treatment regimes and drug development. To support the scalable, adaptive and automated calculation of the binding free energy on high-performance computing resources, we introduce the High- throughput Binding Affinity Calculator (HTBAC). HTBAC uses a building block approach in order to attain both workflow flexibility and performance. We demonstrate close to perfect weak scaling to hundreds of concurrent multi-stage binding affinity calculation pipelines. This permits a rapid time-to-solution that is essentially invariant of the calculation protocol, size of candidate ligands and number of ensemble simulations. As such, HTBAC advances the state of the art of binding affinity calculations and protocols