Elephant Search with Deep Learning for Microarray Data Analysis

Even though there is a plethora of research in Microarray gene expression data analysis, still, it poses challenges for researchers to effectively and efficiently analyze the large yet complex expression of genes. The feature (gene) selection method is of paramount importance for understanding the differences in biological and non-biological variation between samples. In order to address this problem, a novel elephant search (ES) based optimization is proposed to select best gene expressions from the large volume of microarray data. Further, a promising machine learning method is envisioned to leverage such high dimensional and complex microarray dataset for extracting hidden patterns inside to make a meaningful prediction and most accurate classification. In particular, stochastic gradient descent based Deep learning (DL) with softmax activation function is then used on the reduced features (genes) for better classification of different samples according to their gene expression levels. The experiments are carried out on nine most popular Cancer microarray gene selection datasets, obtained from UCI machine learning repository. The empirical results obtained by the proposed elephant search based deep learning (ESDL) approach are compared with most recent published article for its suitability in future Bioinformatics research.Comment: 12 pages, 5 Tabl

Video Deepfake Classification Using Particle Swarm Optimization-based Evolving Ensemble Models

The recent breakthrough of deep learning based generative models has led to the escalated generation of photo-realistic synthetic videos with significant visual quality. Automated reliable detection of such forged videos requires the extraction of fine-grained discriminative spatial-temporal cues. To tackle such challenges, we propose weighted and evolving ensemble models comprising 3D Convolutional Neural Networks (CNNs) and CNN-Recurrent Neural Networks (RNNs) with Particle Swarm Optimization (PSO) based network topology and hyper-parameter optimization for video authenticity classification. A new PSO algorithm is proposed, which embeds Muller’s method and fixed-point iteration based leader enhancement, reinforcement learning-based optimal search action selection, a petal spiral simulated search mechanism, and cross-breed elite signal generation based on adaptive geometric surfaces. The PSO variant optimizes the RNN topologies in CNN-RNN, as well as key learning configurations of 3D CNNs, with the attempt to extract effective discriminative spatial-temporal cues. Both weighted and evolving ensemble strategies are used for ensemble formulation with aforementioned optimized networks as base classifiers. In particular, the proposed PSO algorithm is used to identify optimal subsets of optimized base networks for dynamic ensemble generation to balance between ensemble complexity and performance. Evaluated using several well-known synthetic video datasets, our approach outperforms existing studies and various ensemble models devised by other search methods with statistical significance for video authenticity classification. The proposed PSO model also illustrates statistical superiority over a number of search methods for solving optimization problems pertaining to a variety of artificial landscapes with diverse geometrical layouts

A Particle Swarm Optimization-based Flexible Convolutional Auto-Encoder for Image Classification

Convolutional auto-encoders have shown their remarkable performance in stacking to deep convolutional neural networks for classifying image data during past several years. However, they are unable to construct the state-of-the-art convolutional neural networks due to their intrinsic architectures. In this regard, we propose a flexible convolutional auto-encoder by eliminating the constraints on the numbers of convolutional layers and pooling layers from the traditional convolutional auto-encoder. We also design an architecture discovery method by using particle swarm optimization, which is capable of automatically searching for the optimal architectures of the proposed flexible convolutional auto-encoder with much less computational resource and without any manual intervention. We use the designed architecture optimization algorithm to test the proposed flexible convolutional auto-encoder through utilizing one graphic processing unit card on four extensively used image classification datasets. Experimental results show that our work in this paper significantly outperform the peer competitors including the state-of-the-art algorithm.Comment: Accepted by IEEE Transactions on Neural Networks and Learning Systems, 201

Assessing hyper parameter optimization and speedup for convolutional neural networks

The increased processing power of graphical processing units (GPUs) and the availability of large image datasets has fostered a renewed interest in extracting semantic information from images. Promising results for complex image categorization problems have been achieved using deep learning, with neural networks comprised of many layers. Convolutional neural networks (CNN) are one such architecture which provides more opportunities for image classification. Advances in CNN enable the development of training models using large labelled image datasets, but the hyper parameters need to be specified, which is challenging and complex due to the large number of parameters. A substantial amount of computational power and processing time is required to determine the optimal hyper parameters to define a model yielding good results. This article provides a survey of the hyper parameter search and optimization methods for CNN architectures