Ontological theory for ontological engineering: Biomedical systems information integration

Software application ontologies have the potential to become the keystone in state-of-the-art information management techniques. It is expected that these ontologies will support the sort of reasoning power required to navigate large and complex terminologies correctly and efficiently. Yet, there is one problem in particular that continues to stand in our way. As these terminological structures increase in size and complexity, and the drive to integrate them inevitably swells, it is clear that the level of consistency required for such navigation will become correspondingly difficult to maintain. While descriptive semantic representations are certainly a necessary component to any adequate ontology-based system, so long as ontology engineers rely solely on semantic information, without a sound ontological theory informing their modeling decisions, this goal will surely remain out of reach. In this paper we describe how Language and Computing nv (L&C), along with The Institute for Formal Ontology and Medical Information Sciences (IFOMIS), are working towards developing and implementing just such a theory, combining the open software architecture of L&C’s LinkSuiteTM with the philosophical rigor of IFOMIS’s Basic Formal Ontology. In this way we aim to move beyond the more or less simple controlled vocabularies that have dominated the industry to date

On the role of domain ontologies in the design of domain-specific visual modeling langages

Domain-Specific Visual Modeling Languages should provide notations and abstractions that suitably support problem solving in well-defined application domains. From their user’s perspective, the language’s modeling primitives must be intuitive and expressive enough in capturing all intended aspects of domain conceptualizations. Over the years formal and explicit representations of domain conceptualizations have been developed as domain ontologies. In this paper, we show how the design of these languages can benefit from conceptual tools developed by the ontology engineering community

Ontology mapping: the state of the art

Ontology mapping is seen as a solution provider in today's landscape of ontology research. As the number of ontologies that are made publicly available and accessible on the Web increases steadily, so does the need for applications to use them. A single ontology is no longer enough to support the tasks envisaged by a distributed environment like the Semantic Web. Multiple ontologies need to be accessed from several applications. Mapping could provide a common layer from which several ontologies could be accessed and hence could exchange information in semantically sound manners. Developing such mapping has beeb the focus of a variety of works originating from diverse communities over a number of years. In this article we comprehensively review and present these works. We also provide insights on the pragmatics of ontology mapping and elaborate on a theoretical approach for defining ontology mapping

On What Counts as a Translation

In this article, instead of taking a particular method as translation, we ask: what does one expect to do with a translation? The answer to this question will reveal, though, that none of the first order methods are capable of fully represent the required transference of ontological commitments. Lastly, we will show that this view on translation enlarge considerably the scope of translatable, and, therefore, ontologically comparable theories

Mediation of semantic web services in IRS-III

Business applications composed of heterogeneous distributed components or Web services need mediation to resolve data and process mismatches at runtime. This paper describes mediation in IRS-III, a framework and platform for developing WSMO-based Semantic Web Services. We present our approach to mediation within Semantic Web Services and highlight the role of WSMO mediator types when solving mismatches at the semantic level between a service requester and a service provider. We describe the components of our mediation framework and how it can handle data, goal and process mediation during the activities of selection, composition and invocation of Semantic Web Services

LoLa: a modular ontology of logics, languages and translations

The Distributed Ontology Language (DOL), currently being standardised within the OntoIOp (Ontology Integration and Interoperability) activity of ISO/TC 37/SC 3, aims at providing a unified framework for (i) ontologies formalised in heterogeneous logics, (ii) modular ontologies, (iii) links between ontologies, and (iv) annotation of ontologies.\ud \ud This paper focuses on the LoLa ontology, which formally describes DOL's vocabulary for logics, ontology languages (and their serialisations), as well as logic translations. Interestingly, to adequately formalise the logical relationships between these notions, LoLa itself needs to be axiomatised heterogeneously---a task for which we choose DOL. Namely, we use the logic RDF for ABox assertions, OWL for basic axiomatisations of various modules concerning logics, languages, and translations, FOL for capturing certain closure rules that are not expressible in OWL (For the sake of tool availability it is still helpful not to map everything to FOL.), and circumscription for minimising the extension of concepts describing default translations