6,709 research outputs found
Fast Hierarchical Clustering and Other Applications of Dynamic Closest Pairs
We develop data structures for dynamic closest pair problems with arbitrary
distance functions, that do not necessarily come from any geometric structure
on the objects. Based on a technique previously used by the author for
Euclidean closest pairs, we show how to insert and delete objects from an
n-object set, maintaining the closest pair, in O(n log^2 n) time per update and
O(n) space. With quadratic space, we can instead use a quadtree-like structure
to achieve an optimal time bound, O(n) per update. We apply these data
structures to hierarchical clustering, greedy matching, and TSP heuristics, and
discuss other potential applications in machine learning, Groebner bases, and
local improvement algorithms for partition and placement problems. Experiments
show our new methods to be faster in practice than previously used heuristics.Comment: 20 pages, 9 figures. A preliminary version of this paper appeared at
the 9th ACM-SIAM Symp. on Discrete Algorithms, San Francisco, 1998, pp.
619-628. For source code and experimental results, see
http://www.ics.uci.edu/~eppstein/projects/pairs
Angle Tree: Nearest Neighbor Search in High Dimensions with Low Intrinsic Dimensionality
We propose an extension of tree-based space-partitioning indexing structures
for data with low intrinsic dimensionality embedded in a high dimensional
space. We call this extension an Angle Tree. Our extension can be applied to
both classical kd-trees as well as the more recent rp-trees. The key idea of
our approach is to store the angle (the "dihedral angle") between the data
region (which is a low dimensional manifold) and the random hyperplane that
splits the region (the "splitter"). We show that the dihedral angle can be used
to obtain a tight lower bound on the distance between the query point and any
point on the opposite side of the splitter. This in turn can be used to
efficiently prune the search space. We introduce a novel randomized strategy to
efficiently calculate the dihedral angle with a high degree of accuracy.
Experiments and analysis on real and synthetic data sets shows that the Angle
Tree is the most efficient known indexing structure for nearest neighbor
queries in terms of preprocessing and space usage while achieving high accuracy
and fast search time.Comment: To be submitted to IEEE Transactions on Pattern Analysis and Machine
Intelligenc
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