Logical Conceptualization of Knowledge on the Notion of Language Communication

The main objective of the paper is to provide a conceptual apparatus of a general logical theory of language communication. The aim of the paper is to outline a formal-logical theory of language in which the concepts of the phenomenon of language communication and language communication in general are defined and some conditions for their adequacy are formulated. The theory explicates the key notions of contemporary syntax, semantics, and pragmatics. The theory is formalized on two levels: token-level and type-level. As such, it takes into account the dual – token and type – ontological character of linguistic entities. The basic notions of the theory: language communication, meaning and interpretation are introduced on the second, type-level of formalization, and their required prior formalization of some of the notions introduced on the first, token-level; among others, the notion of an act of communication. Owing to the theory, it is possible to address the problems of adequacy of both empirical acts of communication and of language communication in general. All the conditions of adequacy of communication discussed in the presented paper, are valid for one-way communication (sender-recipient); nevertheless, they can also apply to the reverse direction of language communication (recipient-sender). Therefore, they concern the problem of two-way understanding in language communication

Abridged Petri Nets

A new graphical framework, Abridged Petri Nets (APNs) is introduced for bottom-up modeling of complex stochastic systems. APNs are similar to Stochastic Petri Nets (SPNs) in as much as they both rely on component-based representation of system state space, in contrast to Markov chains that explicitly model the states of an entire system. In both frameworks, so-called tokens (denoted as small circles) represent individual entities comprising the system; however, SPN graphs contain two distinct types of nodes (called places and transitions) with transitions serving the purpose of routing tokens among places. As a result, a pair of place nodes in SPNs can be linked to each other only via a transient stop, a transition node. In contrast, APN graphs link place nodes directly by arcs (transitions), similar to state space diagrams for Markov chains, and separate transition nodes are not needed. Tokens in APN are distinct and have labels that can assume both discrete values ("colors") and continuous values ("ages"), both of which can change during simulation. Component interactions are modeled in APNs using triggers, which are either inhibitors or enablers (the inhibitors' opposites). Hierarchical construction of APNs rely on using stacks (layers) of submodels with automatically matching color policies. As a result, APNs provide at least the same modeling power as SPNs, but, as demonstrated by means of several examples, the resulting models are often more compact and transparent, therefore facilitating more efficient performance evaluation of complex systems.Comment: 17 figure

The Information-Flow Approach to Ontology-Based Semantic Integration

In this article we argue for the lack of formal foundations for ontology-based semantic alignment. We analyse and formalise the basic notions of semantic matching and alignment and we situate them in the context of ontology-based alignment in open-ended and distributed environments, like the Web. We then use the mathematical notion of information flow in a distributed system to ground three hypotheses that enable semantic alignment. We draw our exemplar applications of this work from a variety of interoperability scenarios including ontology mapping, theory of semantic interoperability, progressive ontology alignment, and situated semantic alignment

Generic Pipelined Processor Modeling and High Performance Cycle-Accurate Simulator Generation

Detailed modeling of processors and high performance cycle-accurate simulators are essential for today's hardware and software design. These problems are challenging enough by themselves and have seen many previous research efforts. Addressing both simultaneously is even more challenging, with many existing approaches focusing on one over another. In this paper, we propose the Reduced Colored Petri Net (RCPN) model that has two advantages: first, it offers a very simple and intuitive way of modeling pipelined processors; second, it can generate high performance cycle-accurate simulators. RCPN benefits from all the useful features of Colored Petri Nets without suffering from their exponential growth in complexity. RCPN processor models are very intuitive since they are a mirror image of the processor pipeline block diagram. Furthermore, in our experiments on the generated cycle-accurate simulators for XScale and StrongArm processor models, we achieved an order of magnitude (~15 times) speedup over the popular SimpleScalar ARM simulator.Comment: Submitted on behalf of EDAA (http://www.edaa.com/

Mining Images in Biomedical Publications: Detection and Analysis of Gel Diagrams

Authors of biomedical publications use gel images to report experimental results such as protein-protein interactions or protein expressions under different conditions. Gel images offer a concise way to communicate such findings, not all of which need to be explicitly discussed in the article text. This fact together with the abundance of gel images and their shared common patterns makes them prime candidates for automated image mining and parsing. We introduce an approach for the detection of gel images, and present a workflow to analyze them. We are able to detect gel segments and panels at high accuracy, and present preliminary results for the identification of gene names in these images. While we cannot provide a complete solution at this point, we present evidence that this kind of image mining is feasible.Comment: arXiv admin note: substantial text overlap with arXiv:1209.148

Progressive Ontology Alignment for Meaning Coordination: an Information-Theoretic Foundation

We elaborate on the mathematical foundations of the meaning coordination problem that agents face in open environments. We investigate to which extend the Barwise-Seligman theory of information flow provides a faithful theoretical description of the partial semantic integration that two agents achieve as they progressively align their underlying ontologies through the sharing of tokens, such as instances. We also discuss the insights and practical implications of the Barwise-Seligman theory with respect to the general meaning coordination proble