Unsigned state models for the Jones polynomial

It is well a known and fundamental result that the Jones polynomial can be expressed as Potts and vertex partition functions of signed plane graphs. Here we consider constructions of the Jones polynomial as state models of unsigned graphs and show that the Jones polynomial of any link can be expressed as a vertex model of an unsigned embedded graph. In the process of deriving this result, we show that for every diagram of a link in the 3-sphere there exists a diagram of an alternating link in a thickened surface (and an alternating virtual link) with the same Kauffman bracket. We also recover two recent results in the literature relating the Jones and Bollobas-Riordan polynomials and show they arise from two different interpretations of the same embedded graph.Comment: Minor corrections. To appear in Annals of Combinatoric

Line-graphs of cubic graphs are normal

A graph is called normal if its vertex set can be covered by cliques and also by stable sets, such that every such clique and stable set have non-empty intersection. This notion is due to Korner, who introduced the class of normal graphs as an extension of the class of perfect graphs. Normality has also relevance in information theory. Here we prove, that the line graphs of cubic graphs are normal.Comment: 16 pages, 10 figure

Parallel Mapper

The construction of Mapper has emerged in the last decade as a powerful and effective topological data analysis tool that approximates and generalizes other topological summaries, such as the Reeb graph, the contour tree, split, and joint trees. In this paper, we study the parallel analysis of the construction of Mapper. We give a provably correct parallel algorithm to execute Mapper on multiple processors and discuss the performance results that compare our approach to a reference sequential Mapper implementation. We report the performance experiments that demonstrate the efficiency of our method

Spin Foams and Noncommutative Geometry

We extend the formalism of embedded spin networks and spin foams to include topological data that encode the underlying three-manifold or four-manifold as a branched cover. These data are expressed as monodromies, in a way similar to the encoding of the gravitational field via holonomies. We then describe convolution algebras of spin networks and spin foams, based on the different ways in which the same topology can be realized as a branched covering via covering moves, and on possible composition operations on spin foams. We illustrate the case of the groupoid algebra of the equivalence relation determined by covering moves and a 2-semigroupoid algebra arising from a 2-category of spin foams with composition operations corresponding to a fibered product of the branched coverings and the gluing of cobordisms. The spin foam amplitudes then give rise to dynamical flows on these algebras, and the existence of low temperature equilibrium states of Gibbs form is related to questions on the existence of topological invariants of embedded graphs and embedded two-complexes with given properties. We end by sketching a possible approach to combining the spin network and spin foam formalism with matter within the framework of spectral triples in noncommutative geometry.Comment: 48 pages LaTeX, 30 PDF figure

Connectedness of graphs and its application to connected matroids through covering-based rough sets

Graph theoretical ideas are highly utilized by computer science fields especially data mining. In this field, a data structure can be designed in the form of tree. Covering is a widely used form of data representation in data mining and covering-based rough sets provide a systematic approach to this type of representation. In this paper, we study the connectedness of graphs through covering-based rough sets and apply it to connected matroids. First, we present an approach to inducing a covering by a graph, and then study the connectedness of the graph from the viewpoint of the covering approximation operators. Second, we construct a graph from a matroid, and find the matroid and the graph have the same connectedness, which makes us to use covering-based rough sets to study connected matroids. In summary, this paper provides a new approach to studying graph theory and matroid theory

Nucleation-free 3D3D rigidity

When all non-edge distances of a graph realized in $\mathbb{R}^{d}$ as a {\em bar-and-joint framework} are generically {\em implied} by the bar (edge) lengths, the graph is said to be {\em rigid} in $\mathbb{R}^{d}$. For $d=3$, characterizing rigid graphs, determining implied non-edges and {\em dependent} edge sets remains an elusive, long-standing open problem. One obstacle is to determine when implied non-edges can exist without non-trivial rigid induced subgraphs, i.e., {\em nucleations}, and how to deal with them. In this paper, we give general inductive construction schemes and proof techniques to generate {\em nucleation-free graphs} (i.e., graphs without any nucleation) with implied non-edges. As a consequence, we obtain (a) dependent graphs in $3D$ that have no nucleation; and (b) $3D$ nucleation-free {\em rigidity circuits}, i.e., minimally dependent edge sets in $d=3$. It additionally follows that true rigidity is strictly stronger than a tractable approximation to rigidity given by Sitharam and Zhou \cite{sitharam:zhou:tractableADG:2004}, based on an inductive combinatorial characterization. As an independently interesting byproduct, we obtain a new inductive construction for independent graphs in $3D$. Currently, very few such inductive constructions are known, in contrast to $2D$