Large-Scale Online Semantic Indexing of Biomedical Articles via an Ensemble of Multi-Label Classification Models

Background: In this paper we present the approaches and methods employed in order to deal with a large scale multi-label semantic indexing task of biomedical papers. This work was mainly implemented within the context of the BioASQ challenge of 2014. Methods: The main contribution of this work is a multi-label ensemble method that incorporates a McNemar statistical significance test in order to validate the combination of the constituent machine learning algorithms. Some secondary contributions include a study on the temporal aspects of the BioASQ corpus (observations apply also to the BioASQ's super-set, the PubMed articles collection) and the proper adaptation of the algorithms used to deal with this challenging classification task. Results: The ensemble method we developed is compared to other approaches in experimental scenarios with subsets of the BioASQ corpus giving positive results. During the BioASQ 2014 challenge we obtained the first place during the first batch and the third in the two following batches. Our success in the BioASQ challenge proved that a fully automated machine-learning approach, which does not implement any heuristics and rule-based approaches, can be highly competitive and outperform other approaches in similar challenging contexts

Active Collaborative Ensemble Tracking

A discriminative ensemble tracker employs multiple classifiers, each of which casts a vote on all of the obtained samples. The votes are then aggregated in an attempt to localize the target object. Such method relies on collective competence and the diversity of the ensemble to approach the target/non-target classification task from different views. However, by updating all of the ensemble using a shared set of samples and their final labels, such diversity is lost or reduced to the diversity provided by the underlying features or internal classifiers' dynamics. Additionally, the classifiers do not exchange information with each other while striving to serve the collective goal, i.e., better classification. In this study, we propose an active collaborative information exchange scheme for ensemble tracking. This, not only orchestrates different classifier towards a common goal but also provides an intelligent update mechanism to keep the diversity of classifiers and to mitigate the shortcomings of one with the others. The data exchange is optimized with regard to an ensemble uncertainty utility function, and the ensemble is updated via co-training. The evaluations demonstrate promising results realized by the proposed algorithm for the real-world online tracking.Comment: AVSS 2017 Submissio