Acquisition of weak signals in multi-constellation frequency domain receivers.

New positioning applications’ availability requirements demand receivers with higher sensitivities and ability to process multiple GNSS signals. Possible applications include acquiring one signal per GNSS constellation in the same frequency band and combining them for increased sensitivity or predicting acquisition of other signals. Frequency domain processing can be used for this purpose, since it benefits from parallel processing capabilities of Fast Fourier Transform (FFT), which can be efficiently implemented in software receivers. On the other hand, long coherent integration times are mainly limited due to large FFT size in receivers using frequency domain techniques. A new method is proposed to address the problems in frequency domain receivers without compromising the resources and execution time. A pre-correlation accumulation (PCA) is proposed to partition the received samples into one-code-period blocks, and to sum them together. As a result, the noise is averaged out and the correlation results will gain more power, provided that the relative phase between the data segments is compensated for. In addition to simplicity, the proposed PCA method enables the use of one-size FFT for all integration times. A post-correlation peak combination is also proposed to remove the need for double buffering. The proposed methods are implemented in a configurable Simulink model, developed for acquiring recorded GNSS signals. For weak signal scenarios, a Spirent GPS simulator is used as a source. Acquisition results for GPS L1 C/A and GLONASS L1OF are shown and the performance of the proposed technique is discussed. The proposed techniques target GNSS receivers using frequency domain processing aiming at accommodating all the GNSS signals, while minimizing resource usage. They also apply to weak signal acquisition in frequency domain to answer the availability demand of today’s GNSS positioning applications

Simultaneous lesion and neuroanatomy segmentation in Multiple Sclerosis using deep neural networks

Segmentation of both white matter lesions and deep grey matter structures is an important task in the quantification of magnetic resonance imaging in multiple sclerosis. Typically these tasks are performed separately: in this paper we present a single segmentation solution based on convolutional neural networks (CNNs) for providing fast, reliable segmentations of multimodal magnetic resonance images into lesion classes and normal-appearing grey- and white-matter structures. We show substantial, statistically significant improvements in both Dice coefficient and in lesion-wise specificity and sensitivity, compared to previous approaches, and agreement with individual human raters in the range of human inter-rater variability. The method is trained on data gathered from a single centre: nonetheless, it performs well on data from centres, scanners and field-strengths not represented in the training dataset. A retrospective study found that the classifier successfully identified lesions missed by the human raters. Lesion labels were provided by human raters, while weak labels for other brain structures (including CSF, cortical grey matter, cortical white matter, cerebellum, amygdala, hippocampus, subcortical GM structures and choroid plexus) were provided by Freesurfer 5.3. The segmentations of these structures compared well, not only with Freesurfer 5.3, but also with FSL-First and Freesurfer 6.0

Dual beam swept source optical coherence tomography for microfluidic velocity measurements

Microfluidic flows are an increasing area of interest used for “lab-on-a-chip” bioanalytical techniques, drug discovery, and chemical processing. This requires optical, non-invasive flow-visualization techniques for characterising microfluidic flows. Optical Coherence Tomography (OCT) systems can provide three-dimensional imaging through reasonably-opaque materials with micrometre resolution, coupled to a single optical axis point using optical fibre cables. Developed for imaging the human eye, OCT has been used for the detection of skin cancers and endoscopically in the human body. Industrial applications are growing in popularity including for the monitoring of bond-curing in aerospace, for production-line non-destructive-testing, and for medical device manufacturing and drug encapsulation monitoring. A dual beam Optical Coherence Tomography system has been developed capable of simultaneously imaging microfluidic channel structures, and tracking particles seeded into the flow to measure high velocity flows, using only a single optical access point. This is achieved via a dual optical fibre bundle for light delivery to the sample and a custom high-speed dual channel OCT instrument using an akinetic sweep wavelength laser. The system has 10 μm resolution in air and a sweeping rate of 96 kHz. This OCT system was used to monitor microfluidic flows in 800 μm deep test chips and Poiseuille flows were observed

Low-cost deep learning UAV and Raspberry Pi solution to real time pavement condition assessment

In this thesis, a real-time and low-cost solution to the autonomous condition assessment of pavement is proposed using deep learning, Unmanned Aerial Vehicle (UAV) and Raspberry Pi tiny computer technologies, which makes roads maintenance and renovation management more efficient and cost effective. A comparison study was conducted to compare the performance of seven different combinations of meta-architectures for pavement distress classification. It was observed that real-time object detection architecture SSD with MobileNet feature extractor is the best combination for real-time defect detection to be used by tiny computers. A low-cost Raspberry Pi smart defect detector camera was configured using the trained SSD MobileNet v1, which can be deployed with UAV for real-time and remote pavement condition assessment. The preliminary results show that the smart pavement detector camera achieves an accuracy of 60% at 1.2 frames per second in raspberry pi and 96% at 13.8 frames per second in CPU-based computer

Automatic diagnosis of diabetic retinopathy from fundus images using digital signal and image processing techniques

Automatic diagnosis and display of diabetic retinopathy from images of retina using the techniques of digital signal and image processing is presented in this paper. The acquired images undergo pre-processing to equalize uneven illumination associated with the acquired fundus images. This stage also removes noise present in the image. Segmentation stage clusters the image into two distinct classes while the abnormalities detection stage was used to distinguish between candidate lesions and other information. Methods of diagnosis of red spots, bleeding and detection of vein-artery crossover points have also been developed in this work using the color information, shape, size, object length to breadth ration as contained in the acquired digital fundus image. The algorithm was tested with a separate set of 25 fundus images. From this, the result obtained for Microaneurysms and Haemorrhages diagnosis shows the appropriateness of the method

Pattern recognition of brain fMRI images for various physiological states

The development of fMRI (functional Magnetic Resonance Imaging) has led many researchers to localize brain functions using different stimuli. The use of pattern recognition techniques have made it possible to predict the stimuli being presented from the corresponding brain images and activation patterns. The primary objective of the present study was to use pattern recognition methods to develop a model using available fMRJ images and then to use the model to identify the stimulus presented from a large number of unknown images. Two different experimental conditions were used involving both binary and multi-class classification. Bilateral finger tapping data which had two distinct states Active and Rest were used for binary classification. Binary classification was done using Learning Vector Quantization (LVQ) and Least Square Support Vector Machine (LS-SVM). Gas mixture data, which were obtained from rats while ventilated with different gas mixtures for rest and breath hold task, gave various physiological conditions. These multi-class data were also classified using LS-SVM technique. Feature selection was performed on every data to select out patterns made up of significant voxels using statistical techniques like correlation, paired t-test and ANOVA. The accuracies for binary classification were between 90% and 100% while the average accuracy for multi-categorical data was 70%

Automatic diagnosis of diabetic retinopathy from fundus images using digital signal and image processing techniques

Automatic diagnosis and display of diabetic retinopathy from images of retina using the techniques of digital signal and image processing is presented in this paper. The acquired images undergo pre-processing to equalize uneven illumination associated with the acquired fundus images. This stage also removes noise present in the image. Segmentation stage clusters the image into two distinct classes while the abnormalities detection stage was used to distinguish between candidate lesions and other information. Methods of diagnosis of red spots, bleeding and detection of vein-artery crossover points have also been developed in this work using the color information, shape, size, object length to breadth ration as contained in the acquired digital fundus image. The algorithm was tested with a separate set of 25 fundus images. From this, the result obtained for Microaneurysms and Haemorrhages diagnosis shows the appropriateness of the method

White Matter Hyperintensity and Multi-region Brain MRI Segmentation Using Convolutional Neural Network

Accurate segmentation of WMH (white matter hyperintensity) from the magnetic resonance image is a prerequisite for many precise medical procedures, especially for the diagnosis of vascular dementia. Brain segmentation has important research significance and clinical application prospects especially for early detection of Alzheimer’s disease. In order to effectively perform accurate segmentation according to the MRI characteristics of different regions of the brain, this thesis proposed an optimized 3D u-net and used WHM segmentation as a pre-experiment to select the good hyperparameters (i.e. network depth, image fusion method, and the implementation of loss function) to construct an image feature learning network with both long and short skip connections. Soft voting is used as the postprocessing procedure. Our model is evaluated by a 10-fold cross-validation and achieved a dice score of 0.78 for binary segmentation (WMH segmentation) and accuracy of 0.96 for multi-class segmentation (139 regions brain segmentation), outperforming other methods

3D CNN methods in biomedical image segmentation

A definite trend in Biomedical Imaging is the one towards the integration of increasingly complex interpretative layers to the pure data acquisition process. One of the most interesting and looked-forward goals in the field is the automatic segmentation of objects of interest in extensive acquisition data, target that would allow Biomedical Imaging to look beyond its use as a purely assistive tool to become a cornerstone in ambitious large-scale challenges like the extensive quantitative study of the Human Brain. In 2019 Convolutional Neural Networks represent the state of the art in Biomedical Image segmentation and scientific interests from a variety of fields, spacing from automotive to natural resource exploration, converge to their development. While most of the applications of CNNs are focused on single-image segmentation, biomedical image data -being it MRI, CT-scans, Microscopy, etc- often benefits from three-dimensional volumetric expression. This work explores a reformulation of the CNN segmentation problem that is native to the 3D nature of the data, with particular interest to the applications to Fluorescence Microscopy volumetric data produced at the European Laboratories for Nonlinear Spectroscopy in the context of two different large international human brain study projects: the Human Brain Project and the White House BRAIN Initiative

Unmasking Clever Hans Predictors and Assessing What Machines Really Learn

Current learning machines have successfully solved hard application problems, reaching high accuracy and displaying seemingly "intelligent" behavior. Here we apply recent techniques for explaining decisions of state-of-the-art learning machines and analyze various tasks from computer vision and arcade games. This showcases a spectrum of problem-solving behaviors ranging from naive and short-sighted, to well-informed and strategic. We observe that standard performance evaluation metrics can be oblivious to distinguishing these diverse problem solving behaviors. Furthermore, we propose our semi-automated Spectral Relevance Analysis that provides a practically effective way of characterizing and validating the behavior of nonlinear learning machines. This helps to assess whether a learned model indeed delivers reliably for the problem that it was conceived for. Furthermore, our work intends to add a voice of caution to the ongoing excitement about machine intelligence and pledges to evaluate and judge some of these recent successes in a more nuanced manner.Comment: Accepted for publication in Nature Communication