Quantum Genetics and Quantum Automata Models of Quantum-Molecular Evolution Involved in the Evolution of Organisms and Species

Previous theoretical or general approaches to the problems of Quantum Genetics and Molecular Evolution are considered in this article from the point of view of Quantum Automata Theory first published by the author in 1971 and further developed in several recent articles. The representation of genomes and Interactome networks in categories of many-valued logic LMn –algebras that are naturally transformed during biological evolution, or evolve through interactions with the environment provide a new insight into the mechanisms of molecular evolution, as well as organismal evolution, in terms of sequences of quantum automata. Phenotypic changes are expressed only when certain environmentally-induced quantum-molecular changes are coupled with an internal re-structuring of major submodules of the genome and Interactome networks related to cell cycling and cell growth. Contrary to the commonly held view of `standard’ Darwinist models of evolution, the evolution of organisms and species occurs through coupled multi-molecular transformations induced not only by the environment but actually realized through internal re-organizations of genome and interactome networks. The biological, evolutionary processes involve certain epigenetic transformations that are responsible for phenotypic expression of the genome and Interactome transformations initiated at the quantum-molecular level. It can thus be said that only quantum genetics can provide correct explanations of evolutionary processes that are initiated at the quantum--multi-molecular levels and propagate to the higher levels of organismal and species evolution.

Biological evolution should be therefore regarded as a multi-scale process which is initiated by underlying quantum (coupled) multi-molecular transformations of the genomic and interactomic networks, followed by specific phenotypic transformations at the level of organism and the variable biogroupoids associated with the evolution of species which are essential to the survival of the species. The theoretical framework introduced in this article also paves the way to a Quantitative Biology approach to biological evolution at the quantum-molecular, as well as at the organismal and species levels. This is quite a substantial modification of the 'established’ modern Darwinist, and also of several so-called `molecular evolution’ theories

Pseudorandom number generation with self programmable cellular automata

In this paper, we propose a new class of cellular automata – self programming cellular automata (SPCA) with specific application to pseudorandom number generation. By changing a cell's state transition rules in relation to factors such as its neighboring cell's states, behavioral complexity can be increased and utilized. Interplay between the state transition neighborhood and rule selection neighborhood leads to a new composite neighborhood and state transition rule that is the linear combination of two different mappings with different temporal dependencies. It is proved that when the transitional matrices for both the state transition and rule selection neighborhood are non-singular, SPCA will not exhibit non-group behavior. Good performance can be obtained using simple neighborhoods with certain CA length, transition rules etc. Certain configurations of SPCA pass all DIEHARD and ENT tests with an implementation cost lower than current reported work. Output sampling methods are also suggested to improve output efficiency by sampling the outputs of the new rule selection neighborhoods

Fuzzy cellular model for on-line traffic simulation

This paper introduces a fuzzy cellular model of road traffic that was intended for on-line applications in traffic control. The presented model uses fuzzy sets theory to deal with uncertainty of both input data and simulation results. Vehicles are modelled individually, thus various classes of them can be taken into consideration. In the proposed approach, all parameters of vehicles are described by means of fuzzy numbers. The model was implemented in a simulation of vehicles queue discharge process. Changes of the queue length were analysed in this experiment and compared to the results of NaSch cellular automata model.Comment: The original publication is available at http://www.springerlink.co

A Bibliography on Fuzzy Automata, Grammars and Lanuages

This bibliography contains references to papers on fuzzy formal languages, the generation of fuzzy languages by means of fuzzy grammars, the recognition of fuzzy languages by fuzzy automata and machines, as well as some applications of fuzzy set theory to syntactic pattern recognition, linguistics and natural language processing

On Varieties of Automata Enriched with an Algebraic Structure (Extended Abstract)

Eilenberg correspondence, based on the concept of syntactic monoids, relates varieties of regular languages with pseudovarieties of finite monoids. Various modifications of this correspondence related more general classes of regular languages with classes of more complex algebraic objects. Such generalized varieties also have natural counterparts formed by classes of finite automata equipped with a certain additional algebraic structure. In this survey, we overview several variants of such varieties of enriched automata.Comment: In Proceedings AFL 2014, arXiv:1405.527