Somoclu: An Efficient Parallel Library for Self-Organizing Maps

Somoclu is a massively parallel tool for training self-organizing maps on large data sets written in C++. It builds on OpenMP for multicore execution, and on MPI for distributing the workload across the nodes in a cluster. It is also able to boost training by using CUDA if graphics processing units are available. A sparse kernel is included, which is useful for high-dimensional but sparse data, such as the vector spaces common in text mining workflows. Python, R and MATLAB interfaces facilitate interactive use. Apart from fast execution, memory use is highly optimized, enabling training large emergent maps even on a single computer.Comment: 26 pages, 9 figures. The code is available at https://peterwittek.github.io/somoclu

First Evaluation of the CPU, GPGPU and MIC Architectures for Real Time Particle Tracking based on Hough Transform at the LHC

Recent innovations focused around {\em parallel} processing, either through systems containing multiple processors or processors containing multiple cores, hold great promise for enhancing the performance of the trigger at the LHC and extending its physics program. The flexibility of the CMS/ATLAS trigger system allows for easy integration of computational accelerators, such as NVIDIA's Tesla Graphics Processing Unit (GPU) or Intel's \xphi, in the High Level Trigger. These accelerators have the potential to provide faster or more energy efficient event selection, thus opening up possibilities for new complex triggers that were not previously feasible. At the same time, it is crucial to explore the performance limits achievable on the latest generation multicore CPUs with the use of the best software optimization methods. In this article, a new tracking algorithm based on the Hough transform will be evaluated for the first time on a multi-core Intel Xeon E5-2697v2 CPU, an NVIDIA Tesla K20c GPU, and an Intel \xphi\ 7120 coprocessor. Preliminary time performance will be presented.Comment: 13 pages, 4 figures, Accepted to JINS

Massively-Parallel Break Detection for Satellite Data

The field of remote sensing is nowadays faced with huge amounts of data. While this offers a variety of exciting research opportunities, it also yields significant challenges regarding both computation time and space requirements. In practice, the sheer data volumes render existing approaches too slow for processing and analyzing all the available data. This work aims at accelerating BFAST, one of the state-of-the-art methods for break detection given satellite image time series. In particular, we propose a massively-parallel implementation for BFAST that can effectively make use of modern parallel compute devices such as GPUs. Our experimental evaluation shows that the proposed GPU implementation is up to four orders of magnitude faster than the existing publicly available implementation and up to ten times faster than a corresponding multi-threaded CPU execution. The dramatic decrease in running time renders the analysis of significantly larger datasets possible in seconds or minutes instead of hours or days. We demonstrate the practical benefits of our implementations given both artificial and real datasets.Comment: 10 page

Massively Parallel Computing and the Search for Jets and Black Holes at the LHC

Massively parallel computing at the LHC could be the next leap necessary to reach an era of new discoveries at the LHC after the Higgs discovery. Scientific computing is a critical component of the LHC experiment, including operation, trigger, LHC computing GRID, simulation, and analysis. One way to improve the physics reach of the LHC is to take advantage of the flexibility of the trigger system by integrating coprocessors based on Graphics Processing Units (GPUs) or the Many Integrated Core (MIC) architecture into its server farm. This cutting edge technology provides not only the means to accelerate existing algorithms, but also the opportunity to develop new algorithms that select events in the trigger that previously would have evaded detection. In this article we describe new algorithms that would allow to select in the trigger new topological signatures that include non-prompt jet and black hole--like objects in the silicon tracker.Comment: 15 pages, 11 figures, submitted to NIM

Massively Parallel Ray Tracing Algorithm Using GPU

Ray tracing is a technique for generating an image by tracing the path of light through pixels in an image plane and simulating the effects of high-quality global illumination at a heavy computational cost. Because of the high computation complexity, it can't reach the requirement of real-time rendering. The emergence of many-core architectures, makes it possible to reduce significantly the running time of ray tracing algorithm by employing the powerful ability of floating point computation. In this paper, a new GPU implementation and optimization of the ray tracing to accelerate the rendering process is presented