The Seyfert Population in the Local Universe

The magnitude-limited catalog of the Southern Sky Redshift Survey (SSRS2), is used to characterize the properties of galaxies hosting Active Galactic Nuclei. Using emission-line ratios, we identify a total of 162 (3%) Seyfert galaxies out of the parent sample with 5399 galaxies. The sample contains 121 Seyfert 2 galaxies and 41 Seyfert 1. The SSRS2 Seyfert galaxies are predominantly in spirals of types Sb and earlier, or in galaxies with perturbed appearance as the result of strong interactions or mergers. Seyfert galaxies in this sample are twice as common in barred hosts than the non-Seyferts. By assigning galaxies to groups using a percolation algorithm we find that the Seyfert galaxies in the SSRS2 are more likely to be found in binary systems, when compared to galaxies in the SSRS2 parent sample. However, there is no statistically significant difference between the Seyfert and SSRS2 parent sample when systems with more than 2 galaxies are considered. The analysis of the present sample suggests that there is a stronger correlation between the presence of the AGN phenomenon with internal properties of galaxies (morphology, presence of bar, luminosity) than with environmental effects (local galaxy density, group velocity dispersion, nearest neighbor distance).Comment: 35 pages, 13 figures, Accepted to be publised in Astronomical Journa

The Population Genetic Signature of Polygenic Local Adaptation

Adaptation in response to selection on polygenic phenotypes may occur via subtle allele frequencies shifts at many loci. Current population genomic techniques are not well posed to identify such signals. In the past decade, detailed knowledge about the specific loci underlying polygenic traits has begun to emerge from genome-wide association studies (GWAS). Here we combine this knowledge from GWAS with robust population genetic modeling to identify traits that may have been influenced by local adaptation. We exploit the fact that GWAS provide an estimate of the additive effect size of many loci to estimate the mean additive genetic value for a given phenotype across many populations as simple weighted sums of allele frequencies. We first describe a general model of neutral genetic value drift for an arbitrary number of populations with an arbitrary relatedness structure. Based on this model we develop methods for detecting unusually strong correlations between genetic values and specific environmental variables, as well as a generalization of $Q_{ST}/F_{ST}$ comparisons to test for over-dispersion of genetic values among populations. Finally we lay out a framework to identify the individual populations or groups of populations that contribute to the signal of overdispersion. These tests have considerably greater power than their single locus equivalents due to the fact that they look for positive covariance between like effect alleles, and also significantly outperform methods that do not account for population structure. We apply our tests to the Human Genome Diversity Panel (HGDP) dataset using GWAS data for height, skin pigmentation, type 2 diabetes, body mass index, and two inflammatory bowel disease datasets. This analysis uncovers a number of putative signals of local adaptation, and we discuss the biological interpretation and caveats of these results.Comment: 42 pages including 8 figures and 3 tables; supplementary figures and tables not included on this upload, but are mostly unchanged from v

Stellar population analysis on local infrared-selected galaxies

To study the stellar population of local infrared galaxies, which contain star-forming galaxies, composite galaxies, LINERs, and Seyfert 2s. We also want to find whether infrared luminosity and spectral class have any effects on their stellar populations. The sample galaxies are selected from the main galaxy sample of SDSS-DR4 and then cross-correlated with the IRAS-PSCz catalog. We fit our spectra (stellar absorption lines and continua) using the spectral synthesis code STARLIGHT on the base of the templates of Simple Stellar Population and the spectra of star clusters.Among the 4 spectral classes, LINERs present the oldest stellar populations, and the other 3 sub-samples all present substantial young and intermediate age populations and very few old populations. The importance of young populations decreases from star-forming, composite, Seyfert 2 to LINER. As to different infrared luminosity bins, ULIGs & LIGs (log($L_{IR}/L_{\odot})\geq$11) present younger populations than starbursts and normal galaxies. However, the dominant contributors to mass are old populations in all sample galaxies. The fittings by using the spectra of star clusters with different ages and metallicities as templates also give consistent results. The dominated populations in star-forming and composite galaxies are those with metallicity $Z=0.2Z_\odot$, while LINERs and Seyfert 2s are more metal-rich. The normal galaxies are more metal-rich than the ULIGs & LIGs and starbursts for the star-forming galaxies within different infrared luminosity bins. Additionally, we also compare some synthesis results with other parameters obtained from the MPA/JHU catalog.Comment: 13 pages, 11 figures, accepted for publication by A&

Distant X-ray Galaxies: Insights from the Local Population

A full understanding of the origin of the hard X-ray background requires a complete and accurate census of the distant galaxies that produce it. Unfortunately, distant X-ray galaxies tend to be very faint at all wavelengths, which hinders efforts to perform this census. This chapter discusses the insights that can be obtained through comparison of the distant population to local X-ray galaxies, whose properties are well characterized. Such comparisons will ultimately aid investigations into the cosmic evolution of supermassive black holes and their environments.Comment: 19 pages, 10 figures, to appear as Chapter 7 in "Supermassive Black Holes in the Distant Universe" (2004), ed. A. J. Barger, Kluwer Academic Publishers, in pres

Morphometric and Phylogenic Analysis of Six Population Indonesian Local Goats

The research objectives were to characterize morphometric and genetic distance between populations of Indonesian local goats. The morphological discriminant and canonical analysis were carried out to estimate the phylogenic relationship and determine the discriminant variable between Benggala goats (n= 96), Marica (n= 60), Jawarandu (n= 94), (Kacang (n= 217), Muara (n= 30) and Samosir (n= 42). Discriminant analysis used to clasify body weight and body measurements. In the analysis of variance showed that body weight and body measurement (body length, height at withers, thorax width, thorax height, hert girth, skull width and height, tail length and width, ear length and width) of Muara goats was higher (P<0.05) compared to the other groups, and the lowest was in Marica goats. The smallest genetic distance was between Marica and Samosir (11.207) and the highest were between Muara and Benggala (255.110). The highest similarity between individual within population was found in Kacang (99.28%) and the lowest in Samosir (82.50%). The canonical analysis showed high correlation on canon circumference, body weight, skull width, skull height, and tail width variables so these six variables can be used as distinguishing variables among population. The result from Mahalonobis distance for phenogram tree and canonical analysis showed that six populations of Indonesian local goats were divided into six breed of goats: the first was Muara, the second was Jawarandu, the third was Kacang, the fourth was Benggala, the fifth was Samosir and the sixth was Marica goats. The diversity of body size and body weight of goats was observed quite large, so the chances of increasing productivity could be made through selection and mating programs

Predators reduce extinction risk in noisy metapopulations

Background Spatial structure across fragmented landscapes can enhance regional population persistence by promoting local “rescue effects.” In small, vulnerable populations, where chance or random events between individuals may have disproportionately large effects on species interactions, such local processes are particularly important. However, existing theory often only describes the dynamics of metapopulations at regional scales, neglecting the role of multispecies population dynamics within habitat patches. Findings By coupling analysis across spatial scales we quantified the interaction between local scale population regulation, regional dispersal and noise processes in the dynamics of experimental host-parasitoid metapopulations. We find that increasing community complexity increases negative correlation between local population dynamics. A potential mechanism underpinning this finding was explored using a simple population dynamic model. Conclusions Our results suggest a paradox: parasitism, whilst clearly damaging to hosts at the individual level, reduces extinction risk at the population level

Population genetics models of local ancestry

Migrations have played an important role in shaping the genetic diversity of human populations. Understanding genomic data thus requires careful modeling of historical gene flow. Here we consider the effect of relatively recent population structure and gene flow, and interpret genomes of individuals that have ancestry from multiple source populations as mosaics of segments originating from each population. We propose general and tractable models for describing the evolution of these patterns of local ancestry and their impact on genetic diversity. We focus on the length distribution of continuous ancestry tracts, and the variance in total ancestry proportions among individuals. The proposed models offer improved agreement with Wright-Fisher simulation data when compared to state-of-the art models, and can be used to infer various demographic parameters in gene flow models. Considering HapMap African-American (ASW) data, we find that a model with two distinct phases of `European' gene flow significantly improves the modeling of both tract lengths and ancestry variances.Comment: 25 pages with 7 figures; Genetics: Published online before print April 4, 201