Abmash: Mashing Up Legacy Web Applications by Automated Imitation of Human Actions

Many business web-based applications do not offer applications programming interfaces (APIs) to enable other applications to access their data and functions in a programmatic manner. This makes their composition difficult (for instance to synchronize data between two applications). To address this challenge, this paper presents Abmash, an approach to facilitate the integration of such legacy web applications by automatically imitating human interactions with them. By automatically interacting with the graphical user interface (GUI) of web applications, the system supports all forms of integrations including bi-directional interactions and is able to interact with AJAX-based applications. Furthermore, the integration programs are easy to write since they deal with end-user, visual user-interface elements. The integration code is simple enough to be called a "mashup".Comment: Software: Practice and Experience (2013)

How Google Works; Are Search Engines Really Dumb and Should Educators Care?

Google is like air; your students use Google every day but do they know how it works and ranks results? This “real life literacy session” will explain the factors that determine a webpage’s Google ranking and those factors that students can control to return the best results

Advanced Web Searching for Educators

Progress beyond keyword searching in Google; teach your students a real life literacy skill; learn to use Boolean operators and Google’s advanced search features to search the title field and to limit results to a single top level domain like .gov. With your instruction, they will be better researchers

Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text

Detecting protein-protein interactions (PPIs) is crucial for understanding genetic mechanisms, disease pathogenesis, and drug design. However, with the fast-paced growth of biomedical literature, there is a growing need for automated and accurate extraction of PPIs to facilitate scientific knowledge discovery. Pre-trained language models, such as generative pre-trained transformers (GPT) and bidirectional encoder representations from transformers (BERT), have shown promising results in natural language processing (NLP) tasks. We evaluated the performance of PPI identification of multiple GPT and BERT models using three manually curated gold-standard corpora: Learning Language in Logic (LLL) with 164 PPIs in 77 sentences, Human Protein Reference Database with 163 PPIs in 145 sentences, and Interaction Extraction Performance Assessment with 335 PPIs in 486 sentences. BERT-based models achieved the best overall performance, with BioBERT achieving the highest recall (91.95%) and F1-score (86.84%) and PubMedBERT achieving the highest precision (85.25%). Interestingly, despite not being explicitly trained for biomedical texts, GPT-4 achieved commendable performance, comparable to the top-performing BERT models. It achieved a precision of 88.37%, a recall of 85.14%, and an F1-score of 86.49% on the LLL dataset. These results suggest that GPT models can effectively detect PPIs from text data, offering promising avenues for application in biomedical literature mining. Further research could explore how these models might be fine-tuned for even more specialized tasks within the biomedical domain

Exploiting Wikipedia Semantics for Computing Word Associations

Semantic association computation is the process of automatically quantifying the strength of a semantic connection between two textual units based on various lexical and semantic relations such as hyponymy (car and vehicle) and functional associations (bank and manager). Humans have can infer implicit relationships between two textual units based on their knowledge about the world and their ability to reason about that knowledge. Automatically imitating this behavior is limited by restricted knowledge and poor ability to infer hidden relations. Various factors affect the performance of automated approaches to computing semantic association strength. One critical factor is the selection of a suitable knowledge source for extracting knowledge about the implicit semantic relations. In the past few years, semantic association computation approaches have started to exploit web-originated resources as substitutes for conventional lexical semantic resources such as thesauri, machine readable dictionaries and lexical databases. These conventional knowledge sources suffer from limitations such as coverage issues, high construction and maintenance costs and limited availability. To overcome these issues one solution is to use the wisdom of crowds in the form of collaboratively constructed knowledge sources. An excellent example of such knowledge sources is Wikipedia which stores detailed information not only about the concepts themselves but also about various aspects of the relations among concepts. The overall goal of this thesis is to demonstrate that using Wikipedia for computing word association strength yields better estimates of humans' associations than the approaches based on other structured and unstructured knowledge sources. There are two key challenges to achieve this goal: first, to exploit various semantic association models based on different aspects of Wikipedia in developing new measures of semantic associations; and second, to evaluate these measures compared to human performance in a range of tasks. The focus of the thesis is on exploring two aspects of Wikipedia: as a formal knowledge source, and as an informal text corpus. The first contribution of the work included in the thesis is that it effectively exploited the knowledge source aspect of Wikipedia by developing new measures of semantic associations based on Wikipedia hyperlink structure, informative-content of articles and combinations of both elements. It was found that Wikipedia can be effectively used for computing noun-noun similarity. It was also found that a model based on hybrid combinations of Wikipedia structure and informative-content based features performs better than those based on individual features. It was also found that the structure based measures outperformed the informative content based measures on both semantic similarity and semantic relatedness computation tasks. The second contribution of the research work in the thesis is that it effectively exploited the corpus aspect of Wikipedia by developing a new measure of semantic association based on asymmetric word associations. The thesis introduced the concept of asymmetric associations based measure using the idea of directional context inspired by the free word association task. The underlying assumption was that the association strength can change with the changing context. It was found that the asymmetric association based measure performed better than the symmetric measures on semantic association computation, relatedness based word choice and causality detection tasks. However, asymmetric-associations based measures have no advantage for synonymy-based word choice tasks. It was also found that Wikipedia is not a good knowledge source for capturing verb-relations due to its focus on encyclopedic concepts specially nouns. It is hoped that future research will build on the experiments and discussions presented in this thesis to explore new avenues using Wikipedia for finding deeper and semantically more meaningful associations in a wide range of application areas based on humans' estimates of word associations

Utilizing graph-based representation of text in a hybrid approach to multiple documents summarization

The aim of automatic text summarization is to process text with the purpose of identifying and presenting the most important information appearing in the text. In this research, we aim to investigate automatic multiple document summarization using a hybrid approach of extractive and “shallow abstractive methods. We aim to utilize the graph-based representation approach proposed in [1] and [2] as part of our method to multiple document summarization aiming to provide concise, informative and coherent summaries. We start by scoring sentences based on significance to extract top scoring ones from each document of the set of documents being summarized. In this step, we look into different criteria of scoring sentences, which include: the presence of highly frequent words of the document, the presence of highly frequent words of the set of documents and the presence of words found in the first and last sentence of the document and the different combination of such features. Upon running our experiments we found that the best combination of features to use is utilizing the presence of highly frequent words of the document and presence of words found in the first and last sentences of the document. The average f-score of those features had an average of 7.9% increase to other features\u27 f-scores. Secondly, we address the issue of redundancy of information through clustering sentences of same or similar information into one cluster that will be compressed into one sentence, thus avoiding redundancy of information as much as possible. We investigated clustering the extracted sentences based on two criteria for similarity, the first of which uses word frequency vector for similarity measure and the second of which uses word semantic similarity. Through our experiment, we found that the use of the word vector features yields much better clusters in terms of sentence similarity. The word feature vector had a 20% more number of clusters labeled to contain similar sentences as opposed to those of the word semantic feature. We then adopted a graph-based representation of text proposed in [1] and [2] to represent each sentence in a cluster, and using the k-shortest paths we found the shortest path to represent the final compressed sentence and use it as a final sentence in the summary. Human evaluator scored sentences based on grammatical correctness and almost 74% of 51 sentences evaluated got a perfect score of 2 which is a perfect or near perfect sentence. We finally propose a method for scoring the compressed sentences according to the order in which they should appear in the final summary. We used the Document Understanding Conference dataset for year 2014 as the evaluating dataset for our final system. We used the ROUGE system for evaluation which stands for Recall-Oriented Understudy for Gisting Evaluation. This system compare the automatic summaries to “ideal human references. We also compared our summaries ROUGE scores to those of summaries generated using the MEAD summarization tool. Our system provided better precision and f-score as well as comparable recall scores. On average our system has a percentage increase of 2% for precision and 1.6% increase in f-score than those of MEAD while MEAD has an increase of 0.8% in recall. In addition, our system provided more compressed version of the summary as opposed to that generated by MEAD. We finally ran an experiment to evaluate the order of sentences in the final summary and its comprehensibility where we show that our ordering method produced a comprehensible summary. On average, summaries that scored a perfect score in term of comprehensibility constitute 72% of the evaluated summaries. Evaluators were also asked to count the number of ungrammatical and incomprehensible sentences in the evaluated summaries and on average they were only 10.9% of the summaries sentences. We believe our system provide a \u27shallow abstractive summary to multiple documents that does not require intensive Natural Language Processing.

31th International Conference on Information Modelling and Knowledge Bases

Information modelling is becoming more and more important topic for researchers, designers, and users of information systems.The amount and complexity of information itself, the number of abstractionlevels of information, and the size of databases and knowledge bases arecontinuously growing. Conceptual modelling is one of the sub-areas ofinformation modelling. The aim of this conference is to bring together experts from different areas of computer science and other disciplines, who have a common interest in understanding and solving problems on information modelling and knowledge bases, as well as applying the results of research to practice. We also aim to recognize and study new areas on modelling and knowledge bases to which more attention should be paid. Therefore philosophy and logic, cognitive science, knowledge management, linguistics and management science are relevant areas, too. In the conference, there will be three categories of presentations, i.e. full papers, short papers and position papers

Tell Me More! Towards Implicit User Intention Understanding of Language Model Driven Agents

Current language model-driven agents often lack mechanisms for effective user participation, which is crucial given the vagueness commonly found in user instructions. Although adept at devising strategies and performing tasks, these agents struggle with seeking clarification and grasping precise user intentions. To bridge this gap, we introduce Intention-in-Interaction (IN3), a novel benchmark designed to inspect users' implicit intentions through explicit queries. Next, we propose the incorporation of model experts as the upstream in agent designs to enhance user-agent interaction. Employing IN3, we empirically train Mistral-Interact, a powerful model that proactively assesses task vagueness, inquires user intentions, and refines them into actionable goals before starting downstream agent task execution. Integrating it into the XAgent framework, we comprehensively evaluate the enhanced agent system regarding user instruction understanding and execution, revealing that our approach notably excels at identifying vague user tasks, recovering and summarizing critical missing information, setting precise and necessary agent execution goals, and minimizing redundant tool usage, thus boosting overall efficiency. All the data and codes are released.Comment: 26 pages, 5 tables, 6 figure