Mapping of quantitative adult plant field resistance to leaf rust and stripe rust in two European winter wheat populations reveals co-location of three QTL conferring resistance to both rust pathogens

Key message We detected several, most likely novel QTL for adult plant resistance to rusts. Notably three QTL improved resistance to leaf rust and stripe rust simultaneously indicating broad spectrum resistance QTL. Abstract The rusts of wheat (Puccinia spp.) are destructive fungal wheat diseases. The deployment of resistant cultivars plays a central role in integrated rust disease management. Durability of resistance would be preferred, but is difficult to analyse. The Austrian winter wheat cultivar Capo was released in the 1989 and grown on a large acreage during more than two decades and maintained a good level of quantitative leaf rust and stripe rust resistance. Two bi-parental mapping populations: Capo × Arina and Capo × Furore were tested in multiple environments for severity of leaf rust and stripe rust at the adult plant stage in replicated field experiments. Quantitative trait loci associated with leaf rust and stripe rust severity were mapped using DArT and SSR markers. Five QTL were detected in multiple environments associated with resistance to leaf rust designated as QLr.ifa-2AL, QLr.ifa-2BL, QLr.ifa-2BS, QLr.ifa-3BS, and QLr.ifa-5BL, and five for resistance to stripe rust QYr.ifa-2AL, QYr.ifa-2BL, QYr.ifa-3AS, QYr.ifa-3BS, and QYr.ifa-5A. For all QTL apart from two (QYr.ifa-3AS, QLr.ifa-5BL) Capo contributed the resistance improving allele. The leaf rust and stripe rust resistance QTL on 2AL, 2BL and 3BS mapped to the same chromosome positions, indicating either closely linked genes or pleiotropic gene action. These three multiple disease resistance QTL (QLr.ifa-2AL/QYr.ifa-2AL, QLr.ifa.2BL/QYr.ifa-2BL, QLr.ifa-3BS/QYr.ifa.3BS) potentially contribute novel resistance sources for stripe rust and leaf rust. The long-lasting resistance of Capo apparently rests upon a combination of several genes. The described germplasm, QTL and markers are applicable for simultaneous resistance improvement against leaf rust and stripe rust. © 2014 The Author(s)

Dissection of quantitative and durable leaf rust resistance in Swiss winter wheat reveals a major resistance QTL in the Lr34 chromosomal region

The Swiss winter bread wheat cv. ‘Forno' has a highly effective, durable and quantitative leaf rust (Puccinia triticina Eriks.) resistance which is associated with leaf tip necrosis (LTN). We studied 240 single seed descent lines of an ‘Arina×Forno' F5:7 population to identify and map quantitative trait loci (QTLs) for leaf rust resistance and LTN. Percentage of infected leaf area (%) and the response to infection (RI) were evaluated in seven field trials and were transformed to the area under the disease progress curves (AUDPC). Using composite interval mapping and LOD>4.4, we identified eight chromosomal regions specifically associated with resistance. The largest and most consistent leaf rust resistance locus was identified on the short arm of chromosome 7D (32.6% of variance explained for AUDPC_% and 42.6% for AUDPC_RI) together with the major QTL for LTN (R 2=55.6%) in the same chromosomal region as Lr34 (Xgwm295). A second major leaf rust resistance QTL (R 2=28% and 31.5%, respectively) was located on chromosome arm 1BS close to Xgwm604 and was not associated with LTN. Additional minor QTLs for LTN (2DL, 3DL, 4BS and 5AL) and leaf rust resistance were identified. These latter QTLs might correspond to the leaf rust resistance genes Lr2 or Lr22 (2DS) and Lr14a (7BL

Genetic analysis of rust resistance genes in global wheat cultivars: an overview

Rust is the most devastating fungal disease in wheat. Three rust diseases, namely, leaf or brown rust caused by Puccinia triticina Eriks, stem or black rust caused by Puccinia graminis f. sp. tritici West, and stripe or yellow rust caused by Puccinia striiformis f. Tritici Eriks, are the most economically significant and common diseases among global wheat cultivars. Growing cultivars resistant to rust is the most sustainable, cost-effective and environmentally friendly approach for controlling rust diseases. To date, more than 187 rust resistance genes (80 leaf rust, 58 stem rust and 49 stripe rust) have been derived from diverse wheat or durum wheat cultivars and the related wild species using different molecular methods. This review provides a detailed discussion of the different aspects of rust resistance genes, their primitive sources, their distribution in global wheat cultivars and the importance of durable resistant varieties for controlling rust diseases. This information will serve as a foundation for plant breeders and geneticists to develop durable rust-resistant wheat varieties through marker-assisted breeding or gene pyramiding

Molecular Detection of the Adult Plant Leaf Rust Resistance Gene Lr34 in Romanian Winter Wheat Germplasm

Wheat continues to be one of the most cultivated cereals in the world, and also in Romania. Leaf rust caused by Puccinia triticina reduces the wheat yield and grains quality worldwide. In the context of climate change, leaf rust has become a more important problem for both wheat growers and breeders in our country. Use of genetic resources, carrying rust resistance genes, play an important role in breeding programs leading to resistant varieties, which can have positive impact on environment and economy. Therefore, the identification of resistance genes in modern wheat cultivars and breeding lines, and then selection of the best resistance genes combination(s) are the first steps for a successful breeding program. At present, one of the best known and studied adult plant leaf rust resistance gene is Lr34 that contributes significantly to durable leaf rust resistance. The functional markers that enable early detection of this gene are a major advantage in the wheat breeding. The aim of this study was to evaluate the presence of the slow rusting resistance gene Lr34 in Romanian wheat germplasm, using cssfr4 and cssfr5 molecular markers. Screening of 47 winter bread wheat cultivars and 47 breeding lines with these markers showed the presence of the Lr34 resistant haplotype in 62% (homozygous genotypes) of the total genotypes. A high frequency (79%) of Lr34 resistance allele was found among 47 breeding lines, suggesting that maintenance of a high frequency of this allele represents a real advantage for the development of adult plant resistance in Romanian breeding programs

Identification and genetic characterization of an Aegilops tauschii ortholog of the wheat leaf rust disease resistance gene Lr1

Aegilops tauschii (goat grass) is the progenitor of the Dgenome in hexaploid bread wheat. We have screened more than 200 Ae. tauschii accessions for resistance against leaf rust (Puccinia triticina) isolates, which are avirulent on the leaf rust resistance gene Lr1. Approximately 3.5% of the Ae. tauschii accessions displayed the same low infection type as the tester line Thatcher Lr1. The accession Tr.t.213, which showed resistance after artificial infection with Lr1 isolates both in Mexico and in Switzerland, was chosen for further analysis. Genetic analysis showed that the resistance in this accession is controlled by a single dominant gene, which mapped at the same chromosomal position as Lr1 in wheat. It was delimited in a 1.3-cM region between the restriction fragment length polymorphism (RFLP) markers ABC718 and PSR567 on chromosome5DL of Ae. tauschii. The gene was more tightly linked to PSR567 (0.47cM) than to ABC718 (0.79cM). These results indicate that the resistance gene in Ae. tauschii accession Tr.t.213 is an ortholog of the leaf rust resistance gene Lr1 of bread wheat, suggesting that Lr1 originally evolved in diploid goat grass and was introgressed into the wheat Dgenome during or after domestication of hexaploid wheat. Compared to hexaploid wheat, higher marker polymorphism and recombination frequencies were observed in the region of the Lr1 ortholog in Ae. tauschii. The identification of Lr1Ae, the orthologous gene of wheat Lr1, in Ae. tauschii will allow map-based cloning of Lr1 from this genetically simpler, diploid genom

Characterization of Lr46, a gene conferring partial resistance to wheat leaf rust

Components of resistance conferred by the Lr46 gene, reported as causing "slow rusting" resistance to leaf rust in wheat, were studied and compared with the effects of Lr34 and genes for quantitative resistance in cv. Akabozu. Lr34 is a gene that confers non-hypersensitive type of resistance. The effect of Lr46 resembles that of Lr34 and other wheats reported with partial resistance. At macroscopic level, Lr46 produced a longer latency period than observed on the susceptible recurrent parent Lalbahadur, and a reduction of the infection frequency not associated with hypersensitivity. Microscopically, Lr46 increased the percentage of early aborted infection units not associated with host cell necrosis and decreased the colony size. The effect of Lr46 is comparable to that of Lr34 in adult plant stage, but in seedling stage its effect is weaker than that of Lr34

BRS 277: Wheat cultivar

The wheat cultivar ‘BRS 277’ was developed by Embrapa (Empresa Brasileira de Pesquisa Agropecuária),resulting from a cross between OR1 and Coker 97-33. The plant height of ‘BRS 277’ is short, frost resistance in the vegetativestage is good and resistance to leaf rust moderate

The phenotypic expression of QTLs for partial resistance to barley leaf rust during plant development

Partial resistance is generally considered to be a durable form of resistance. In barley, Rphq2, Rphq3 and Rphq4 have been identified as consistent quantitative trait loci (QTLs) for partial resistance to the barley leaf rust pathogen Puccinia hordei. These QTLs have been incorporated separately into the susceptible L94 and the partially resistant Vada barley genetic backgrounds to obtain two sets of near isogenic lines (NILs). Previous studies have shown that these QTLs are not effective at conferring disease resistance in all stages of plant development. In the present study, the two sets of QTL–NILs and the two recurrent parents, L94 and Vada, were evaluated for resistance to P. hordei isolate 1.2.1 simultaneously under greenhouse conditions from the first leaf to the flag leaf stage. Effect of the QTLs on resistance was measured by development rate of the pathogen, expressed as latency period (LP). The data show that Rphq2 prolongs LP at the seedling stage (the first and second leaf stages) but has almost no effect on disease resistance in adult plants. Rphq4 showed no effect on LP until the third leaf stage, whereas Rphq3 is consistently effective at prolonging LP from the first leaf to the flag leaf. The changes in the effectiveness of Rphq2 and Rphq4 happen at the barley tillering stage (the third to fourth leaf stages). These results indicate that multiple disease evaluations of a single plant by repeated inoculations of the fourth leaf to the flag leaf should be conducted to precisely estimate the effect of Rphq4. The present study confirms and describes in detail the plant development-dependent effectiveness of partial resistance genes and, consequently, will enable a more precise evaluation of partial resistance regulation during barley developmen

Identification of Leaf Rust Resistance Genes in Wheat Cultivars Produced in Kazakhstan

Leaf rust, caused by Puccinia recondita f. sp. tritici, is one of the major diseases of wheat in Kazakhstan. To effectively use leaf rust resistance genes (Lr), it is important for breeders to know the resistance genotype in current cultivars. In this study, 30 winter wheat entries grown and/or produced in Kazakhstan were investigated using molecular markers to determine the presence and absence of eight important Lr genes. Molecular screening of these genotypes showed contrasting differences in the frequencies of these genes. Among the 30 entries, 17 carried leaf rust resistance gene Lr1, six had Lr26 and Lr34, and Lr10 and Lr37 were found in three cultivars. Two single cultivars separately carried Lr19 and Lr68, while Lr9 was not detected in any genotypes in this study. Field evaluation demonstrated that two of the most frequent two genes (Lr1 and Lr26) to be ineffective. While Lr34 provided some protection, the remaining effective Lr genes were found only in few genotypes: Lr37 occurred in Kazakh genotypes L-1090 and Krasnovodapadskaya 210 and in the US cultivar Madsen; Lr19 and Lr68 were likely present only in Russian and Kazakh cultivars, Pallada and Yegemen, respectively. The highest resistance over three years of leaf rust testing was found in Kazakh cultivars, Karasay, Krasnovodapadskaya 210, L-1090, Arap and Yegmen, foreign cultivars Madsen, Pallada and the control Parula (Lr68). Data may assist breeders to incorporate effective Lr genes into new cultivars