2 research outputs found
Key/Value-enabled Flash Memory for Complex Scientific Workflows with On-line Analysis and Visualization
Scientific workflows are often composed of compute-intensive simulations and data-intensive analysis and visualization, both equally important for productivity. High-performance computers run the compute-intensive phases efficiently, but data-intensive processing is still getting less attention. Dense non-volatile memory integrated into supercomputers can help address this problem. In addition to density, it offers significantly finer-grained I/O than disk-based I/O systems. We present a way to exploit the fundamental capabilities of Storage-Class Memories (SCM), such as Flash, by using scalable key-value (KV) I/O methods instead of traditional file I/O calls commonly used in HPC systems. Our objective is to enable higher performance for on-line and near-line storage for analysis and visualization of very high resolution, but correspondingly transient, simulation results. In this paper, we describe 1) the adaptation of a scalable key-value store to a BlueGene/Q system with integrated Flash memory, 2) a novel key-value aggregation module which implements coalesced, function-shipped calls between the clients and the servers, and 3) the refactoring of a scientific workflow to use application-relevant keys for fine-grained data subsets. The resulting implementation is analogous to function-shipping of POSIX I/O calls but shows an order of magnitude increase in read and a factor 2.5x increase in write IOPS performance (11 million read IOPS; 2.5 million write IOPS from 4096 compute nodes) when compared to a classical file system on the same system. It represents an innovative approach for the integration of SCM within an HPC system at scale
Parallel Rendering and Large Data Visualization
We are living in the big data age: An ever increasing amount of data is being
produced through data acquisition and computer simulations. While large scale
analysis and simulations have received significant attention for cloud and
high-performance computing, software to efficiently visualise large data sets
is struggling to keep up.
Visualization has proven to be an efficient tool for understanding data, in
particular visual analysis is a powerful tool to gain intuitive insight into
the spatial structure and relations of 3D data sets. Large-scale visualization
setups are becoming ever more affordable, and high-resolution tiled display
walls are in reach even for small institutions. Virtual reality has arrived in
the consumer space, making it accessible to a large audience.
This thesis addresses these developments by advancing the field of parallel
rendering. We formalise the design of system software for large data
visualization through parallel rendering, provide a reference implementation of
a parallel rendering framework, introduce novel algorithms to accelerate the
rendering of large amounts of data, and validate this research and development
with new applications for large data visualization. Applications built using
our framework enable domain scientists and large data engineers to better
extract meaning from their data, making it feasible to explore more data and
enabling the use of high-fidelity visualization installations to see more
detail of the data.Comment: PhD thesi