Catalyst Acceleration for First-order Convex Optimization: from Theory to Practice

We introduce a generic scheme for accelerating gradient-based optimization methods in the sense of Nesterov. The approach, called Catalyst, builds upon the inexact accelerated proximal point algorithm for minimizing a convex objective function, and consists of approximately solving a sequence of well-chosen auxiliary problems, leading to faster convergence. One of the keys to achieve acceleration in theory and in practice is to solve these sub-problems with appropriate accuracy by using the right stopping criterion and the right warm-start strategy. We give practical guidelines to use Catalyst and present a comprehensive analysis of its global complexity. We show that Catalyst applies to a large class of algorithms, including gradient descent, block coordinate descent, incremental algorithms such as SAG, SAGA, SDCA, SVRG, MISO/Finito, and their proximal variants. For all of these methods, we establish faster rates using the Catalyst acceleration, for strongly convex and non-strongly convex objectives. We conclude with extensive experiments showing that acceleration is useful in practice, especially for ill-conditioned problems.Comment: link to publisher website: http://jmlr.org/papers/volume18/17-748/17-748.pd

Bounded Coordinate-Descent for Biological Sequence Classification in High Dimensional Predictor Space

We present a framework for discriminative sequence classification where the learner works directly in the high dimensional predictor space of all subsequences in the training set. This is possible by employing a new coordinate-descent algorithm coupled with bounding the magnitude of the gradient for selecting discriminative subsequences fast. We characterize the loss functions for which our generic learning algorithm can be applied and present concrete implementations for logistic regression (binomial log-likelihood loss) and support vector machines (squared hinge loss). Application of our algorithm to protein remote homology detection and remote fold recognition results in performance comparable to that of state-of-the-art methods (e.g., kernel support vector machines). Unlike state-of-the-art classifiers, the resulting classification models are simply lists of weighted discriminative subsequences and can thus be interpreted and related to the biological problem