Deep Learning in Cardiology

The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data. Deep learning has emerged as a more accurate and effective technology in a wide range of medical problems such as diagnosis, prediction and intervention. Deep learning is a representation learning method that consists of layers that transform the data non-linearly, thus, revealing hierarchical relationships and structures. In this review we survey deep learning application papers that use structured data, signal and imaging modalities from cardiology. We discuss the advantages and limitations of applying deep learning in cardiology that also apply in medicine in general, while proposing certain directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table

Histopathological image analysis : a review

Over the past decade, dramatic increases in computational power and improvement in image analysis algorithms have allowed the development of powerful computer-assisted analytical approaches to radiological data. With the recent advent of whole slide digital scanners, tissue histopathology slides can now be digitized and stored in digital image form. Consequently, digitized tissue histopathology has now become amenable to the application of computerized image analysis and machine learning techniques. Analogous to the role of computer-assisted diagnosis (CAD) algorithms in medical imaging to complement the opinion of a radiologist, CAD algorithms have begun to be developed for disease detection, diagnosis, and prognosis prediction to complement the opinion of the pathologist. In this paper, we review the recent state of the art CAD technology for digitized histopathology. This paper also briefly describes the development and application of novel image analysis technology for a few specific histopathology related problems being pursued in the United States and Europe

Trustworthy clinical AI solutions: a unified review of uncertainty quantification in deep learning models for medical image analysis

The full acceptance of Deep Learning (DL) models in the clinical field is rather low with respect to the quantity of high-performing solutions reported in the literature. Particularly, end users are reluctant to rely on the rough predictions of DL models. Uncertainty quantification methods have been proposed in the literature as a potential response to reduce the rough decision provided by the DL black box and thus increase the interpretability and the acceptability of the result by the final user. In this review, we propose an overview of the existing methods to quantify uncertainty associated to DL predictions. We focus on applications to medical image analysis, which present specific challenges due to the high dimensionality of images and their quality variability, as well as constraints associated to real-life clinical routine. We then discuss the evaluation protocols to validate the relevance of uncertainty estimates. Finally, we highlight the open challenges of uncertainty quantification in the medical field

On Using Active Learning and Self-Training when Mining Performance Discussions on Stack Overflow

Abundant data is the key to successful machine learning. However, supervised learning requires annotated data that are often hard to obtain. In a classification task with limited resources, Active Learning (AL) promises to guide annotators to examples that bring the most value for a classifier. AL can be successfully combined with self-training, i.e., extending a training set with the unlabelled examples for which a classifier is the most certain. We report our experiences on using AL in a systematic manner to train an SVM classifier for Stack Overflow posts discussing performance of software components. We show that the training examples deemed as the most valuable to the classifier are also the most difficult for humans to annotate. Despite carefully evolved annotation criteria, we report low inter-rater agreement, but we also propose mitigation strategies. Finally, based on one annotator's work, we show that self-training can improve the classification accuracy. We conclude the paper by discussing implication for future text miners aspiring to use AL and self-training.Comment: Preprint of paper accepted for the Proc. of the 21st International Conference on Evaluation and Assessment in Software Engineering, 201

A Two-stage Classification Method for High-dimensional Data and Point Clouds

High-dimensional data classification is a fundamental task in machine learning and imaging science. In this paper, we propose a two-stage multiphase semi-supervised classification method for classifying high-dimensional data and unstructured point clouds. To begin with, a fuzzy classification method such as the standard support vector machine is used to generate a warm initialization. We then apply a two-stage approach named SaT (smoothing and thresholding) to improve the classification. In the first stage, an unconstraint convex variational model is implemented to purify and smooth the initialization, followed by the second stage which is to project the smoothed partition obtained at stage one to a binary partition. These two stages can be repeated, with the latest result as a new initialization, to keep improving the classification quality. We show that the convex model of the smoothing stage has a unique solution and can be solved by a specifically designed primal-dual algorithm whose convergence is guaranteed. We test our method and compare it with the state-of-the-art methods on several benchmark data sets. The experimental results demonstrate clearly that our method is superior in both the classification accuracy and computation speed for high-dimensional data and point clouds.Comment: 21 pages, 4 figure