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Automatic alignment for three-dimensional tomographic reconstruction
In tomographic reconstruction, the goal is to reconstruct an unknown object
from a collection of line integrals. Given a complete sampling of such line
integrals for various angles and directions, explicit inverse formulas exist to
reconstruct the object. Given noisy and incomplete measurements, the inverse
problem is typically solved through a regularized least-squares approach. A
challenge for both approaches is that in practice the exact directions and
offsets of the x-rays are only known approximately due to, e.g. calibration
errors. Such errors lead to artifacts in the reconstructed image. In the case
of sufficient sampling and geometrically simple misalignment, the measurements
can be corrected by exploiting so-called consistency conditions. In other
cases, such conditions may not apply and we have to solve an additional inverse
problem to retrieve the angles and shifts. In this paper we propose a general
algorithmic framework for retrieving these parameters in conjunction with an
algebraic reconstruction technique. The proposed approach is illustrated by
numerical examples for both simulated data and an electron tomography dataset
Four-dimensional tomographic reconstruction by time domain decomposition
Since the beginnings of tomography, the requirement that the sample does not
change during the acquisition of one tomographic rotation is unchanged. We
derived and successfully implemented a tomographic reconstruction method which
relaxes this decades-old requirement of static samples. In the presented
method, dynamic tomographic data sets are decomposed in the temporal domain
using basis functions and deploying an L1 regularization technique where the
penalty factor is taken for spatial and temporal derivatives. We implemented
the iterative algorithm for solving the regularization problem on modern GPU
systems to demonstrate its practical use
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