Patch-based Convolutional Neural Network for Whole Slide Tissue Image Classification

Convolutional Neural Networks (CNN) are state-of-the-art models for many image classification tasks. However, to recognize cancer subtypes automatically, training a CNN on gigapixel resolution Whole Slide Tissue Images (WSI) is currently computationally impossible. The differentiation of cancer subtypes is based on cellular-level visual features observed on image patch scale. Therefore, we argue that in this situation, training a patch-level classifier on image patches will perform better than or similar to an image-level classifier. The challenge becomes how to intelligently combine patch-level classification results and model the fact that not all patches will be discriminative. We propose to train a decision fusion model to aggregate patch-level predictions given by patch-level CNNs, which to the best of our knowledge has not been shown before. Furthermore, we formulate a novel Expectation-Maximization (EM) based method that automatically locates discriminative patches robustly by utilizing the spatial relationships of patches. We apply our method to the classification of glioma and non-small-cell lung carcinoma cases into subtypes. The classification accuracy of our method is similar to the inter-observer agreement between pathologists. Although it is impossible to train CNNs on WSIs, we experimentally demonstrate using a comparable non-cancer dataset of smaller images that a patch-based CNN can outperform an image-based CNN

Learning a Dilated Residual Network for SAR Image Despeckling

In this paper, to break the limit of the traditional linear models for synthetic aperture radar (SAR) image despeckling, we propose a novel deep learning approach by learning a non-linear end-to-end mapping between the noisy and clean SAR images with a dilated residual network (SAR-DRN). SAR-DRN is based on dilated convolutions, which can both enlarge the receptive field and maintain the filter size and layer depth with a lightweight structure. In addition, skip connections and residual learning strategy are added to the despeckling model to maintain the image details and reduce the vanishing gradient problem. Compared with the traditional despeckling methods, the proposed method shows superior performance over the state-of-the-art methods on both quantitative and visual assessments, especially for strong speckle noise.Comment: 18 pages, 13 figures, 7 table