QML-Morven : A Novel Framework for Learning Qualitative Models

Publisher PD

Qualitative System Identification from Imperfect Data

Experience in the physical sciences suggests that the only realistic means of understanding complex systems is through the use of mathematical models. Typically, this has come to mean the identification of quantitative models expressed as differential equations. Quantitative modelling works best when the structure of the model (i.e., the form of the equations) is known; and the primary concern is one of estimating the values of the parameters in the model. For complex biological systems, the model-structure is rarely known and the modeler has to deal with both model-identification and parameter-estimation. In this paper we are concerned with providing automated assistance to the first of these problems. Specifically, we examine the identification by machine of the structural relationships between experimentally observed variables. These relationship will be expressed in the form of qualitative abstractions of a quantitative model. Such qualitative models may not only provide clues to the precise quantitative model, but also assist in understanding the essence of that model. Our position in this paper is that background knowledge incorporating system modelling principles can be used to constrain effectively the set of good qualitative models. Utilising the model-identification framework provided by Inductive Logic Programming (ILP) we present empirical support for this position using a series of increasingly complex artificial datasets. The results are obtained with qualitative and quantitative data subject to varying amounts of noise and different degrees of sparsity. The results also point to the presence of a set of qualitative states, which we term kernel subsets, that may be necessary for a qualitative model-learner to learn correct models. We demonstrate scalability of the method to biological system modelling by identification of the glycolysis metabolic pathway from data

Computational methods for finding long simple cycles in complex networks

© 2017 Elsevier B.V. Detection of long simple cycles in real-world complex networks finds many applications in layout algorithms, information flow modelling, as well as in bioinformatics. In this paper, we propose two computational methods for finding long cycles in real-world networks. The first method is an exact approach based on our own integer linear programming formulation of the problem and a data mining pipeline. This pipeline ensures that the problem is solved as a sequence of integer linear programs. The second method is a multi-start local search heuristic, which combines an initial construction of a long cycle using depth-first search with four different perturbation operators. Our experimental results are presented for social network samples, graphs studied in the network science field, graphs from DIMACS series, and protein-protein interaction networks. These results show that our formulation leads to a significantly more efficient exact approach to solve the problem than a previous formulation. For 14 out of 22 networks, we have found the optimal solutions. The potential of heuristics in this problem is also demonstrated, especially in the context of large-scale problem instances

QCDINS 2.0 - A Monte Carlo generator for instanton-induced processes in deep-inelastic scattering

We describe a Monte Carlo event generator for the simulation of QCD-instanton induced processes in deep-inelastic scattering (HERA). The QCDINS package is designed as an ``add-on'' hard process generator interfaced to the general hadronic event simulation package HERWIG. It incorporates the theoretically predicted production rate for instanton-induced events as well as the essential characteristics that have been derived theoretically for the partonic final state of instanton-induced processes: notably, the flavour democratic and isotropic production of the partonic final state, energy weight factors different for gluons and quarks, and a high average multiplicity O(10) of produced partons with a Poisson distribution of the gluon multiplicity. While the subsequent perturbative evolution of the generated partons is always handled by the HERWIG package, the final hadronization step may optionally be performed also by means of the general hadronic event simulation package JETSET.Comment: 51 pages, 3 figure

Networked Computing in Wireless Sensor Networks for Structural Health Monitoring

This paper studies the problem of distributed computation over a network of wireless sensors. While this problem applies to many emerging applications, to keep our discussion concrete we will focus on sensor networks used for structural health monitoring. Within this context, the heaviest computation is to determine the singular value decomposition (SVD) to extract mode shapes (eigenvectors) of a structure. Compared to collecting raw vibration data and performing SVD at a central location, computing SVD within the network can result in significantly lower energy consumption and delay. Using recent results on decomposing SVD, a well-known centralized operation, into components, we seek to determine a near-optimal communication structure that enables the distribution of this computation and the reassembly of the final results, with the objective of minimizing energy consumption subject to a computational delay constraint. We show that this reduces to a generalized clustering problem; a cluster forms a unit on which a component of the overall computation is performed. We establish that this problem is NP-hard. By relaxing the delay constraint, we derive a lower bound to this problem. We then propose an integer linear program (ILP) to solve the constrained problem exactly as well as an approximate algorithm with a proven approximation ratio. We further present a distributed version of the approximate algorithm. We present both simulation and experimentation results to demonstrate the effectiveness of these algorithms