Deep Spectral CNN for Laser Induced Breakdown Spectroscopy

This work proposes a spectral convolutional neural network (CNN) operating on laser induced breakdown spectroscopy (LIBS) signals to learn to (1) disentangle spectral signals from the sources of sensor uncertainty (i.e., pre-process) and (2) get qualitative and quantitative measures of chemical content of a sample given a spectral signal (i.e., calibrate). Once the spectral CNN is trained, it can accomplish either task through a single feed-forward pass, with real-time benefits and without any additional side information requirements including dark current, system response, temperature and detector-to-target range. Our experiments demonstrate that the proposed method outperforms the existing approaches used by the Mars Science Lab for pre-processing and calibration for remote sensing observations from the Mars rover, 'Curiosity'

Stabilizing Transformer Training by Preventing Attention Entropy Collapse

Training stability is of great importance to Transformers. In this work, we investigate the training dynamics of Transformers by examining the evolution of the attention layers. In particular, we track the attention entropy for each attention head during the course of training, which is a proxy for model sharpness. We identify a common pattern across different architectures and tasks, where low attention entropy is accompanied by high training instability, which can take the form of oscillating loss or divergence. We denote the pathologically low attention entropy, corresponding to highly concentrated attention scores, as $\textit{entropy collapse}$. As a remedy, we propose $\sigma$Reparam, a simple and efficient solution where we reparametrize all linear layers with spectral normalization and an additional learned scalar. We demonstrate that the proposed reparameterization successfully prevents entropy collapse in the attention layers, promoting more stable training. Additionally, we prove a tight lower bound of the attention entropy, which decreases exponentially fast with the spectral norm of the attention logits, providing additional motivation for our approach. We conduct experiments with $\sigma$Reparam on image classification, image self-supervised learning, machine translation, automatic speech recognition, and language modeling tasks, across Transformer architectures. We show that $\sigma$Reparam provides stability and robustness with respect to the choice of hyperparameters, going so far as enabling training (a) a Vision Transformer to competitive performance without warmup, weight decay, layer normalization or adaptive optimizers; (b) deep architectures in machine translation and (c) speech recognition to competitive performance without warmup and adaptive optimizers

Fast, Scalable, and Accurate Algorithms for Time-Series Analysis

Time is a critical element for the understanding of natural processes (e.g., earthquakes and weather) or human-made artifacts (e.g., stock market and speech signals). The analysis of time series, the result of sequentially collecting observations of such processes and artifacts, is becoming increasingly prevalent across scientific and industrial applications. The extraction of non-trivial features (e.g., patterns, correlations, and trends) in time series is a critical step for devising effective time-series mining methods for real-world problems and the subject of active research for decades. In this dissertation, we address this fundamental problem by studying and presenting computational methods for efficient unsupervised learning of robust feature representations from time series. Our objective is to (i) simplify and unify the design of scalable and accurate time-series mining algorithms; and (ii) provide a set of readily available tools for effective time-series analysis. We focus on applications operating solely over time-series collections and on applications where the analysis of time series complements the analysis of other types of data, such as text and graphs. For applications operating solely over time-series collections, we propose a generic computational framework, GRAIL, to learn low-dimensional representations that natively preserve the invariances offered by a given time-series comparison method. GRAIL represents a departure from classic approaches in the time-series literature where representation methods are agnostic to the similarity function used in subsequent learning processes. GRAIL relies on the attractive idea that once we construct the data-to-data similarity matrix most time-series mining tasks can be trivially solved. To overcome scalability issues associated with approaches relying on such matrices, GRAIL exploits time-series clustering to construct a small set of landmark time series and learns representations to reduce the data-to-data matrix to a data-to-landmark points matrix. To demonstrate the effectiveness of GRAIL, we first present domain-independent, highly accurate, and scalable time-series clustering methods to facilitate exploration and summarization of time-series collections. Then, we show that GRAIL representations, when combined with suitable methods, significantly outperform, in terms of efficiency and accuracy, state-of-the-art methods in major time-series mining tasks, such as querying, clustering, classification, sampling, and visualization. Overall, GRAIL rises as a new primitive for highly accurate, yet scalable, time-series analysis. For applications where the analysis of time series complements the analysis of other types of data, such as text and graphs, we propose generic, simple, and lightweight methodologies to learn features from time-varying measurements. Such applications often organize operations over different types of data in a pipeline such that one operation provides input---in the form of feature vectors---to subsequent operations. To reason about the temporal patterns and trends in the underlying features, we need to (i) track the evolution of features over different time periods; and (ii) transform these time-varying features into actionable knowledge (e.g., forecasting an outcome). To address this challenging problem, we propose principled approaches to model time-varying features and study two large-scale, real-world, applications. Specifically, we first study the problem of predicting the impact of scientific concepts through temporal analysis of characteristics extracted from the metadata and full text of scientific articles. Then, we explore the promise of harnessing temporal patterns in behavioral signals extracted from web search engine logs for early detection of devastating diseases. In both applications, combinations of features with time-series relevant features yielded the greatest impact than any other indicator considered in our analysis. We believe that our simple methodology, along with the interesting domain-specific findings that our work revealed, will motivate new studies across different scientific and industrial settings

Improving Contextual Suggestions using Open Web Domain Knowledge

Also published online by CEUR Workshop Proceedings (CEUR-WS.org, ISSN 1613-0073)Contextual suggestion aims at recommending items to users given their current context, such as location-based tourist recommendations. Our contextual suggestion ranking model consists of two main components: selecting candidate suggestions and providing a ranked list of personalized suggestions. We focus on selecting appropriate suggestions from the ClueWeb12 collection using tourist domain knowledge inferred from social sites and resources available on the public Web (Open Web). Specifically, we generate two candidate subsets retrieved from the ClueWeb12 collection, one by filtering the content on mentions of the location context, and one by integrating domain knowledge derived from the OpenWeb. The impact of these candidate selection methods on contextual suggestion effectiveness is analyzed using the test collection constructed for the TREC Contextual Suggestion Track in 2014. Our main findings are that contextual suggestion performance on the subset created using OpenWeb domain knowledge is significantly better than using only geographical information. Second, using a prior probability estimated from domain knowledge leads to better suggestions and improves the performance

Analyzing short-answer questions and their automatic scoring - studies on semantic relations in reading comprehension and the reduction of human annotation effort

Short-answer questions are a wide-spread exercise type in many educational areas. Answers given by learners to such questions are scored by teachers based on their content alone ignoring their linguistic correctness as far as possible. They typically have a length of up to a few sentences. Manual scoring is a time-consuming task, so that automatic scoring of short-answer questions using natural language processing techniques has become an important task. This thesis focuses on two aspects of short-answer questions and their scoring: First, we concentrate on a reading comprehension scenario for learners of German as a foreign language, where students answer questions about a reading text. Within this scenario, we examine the multiple relations between reading texts, learner answers and teacher-specified target answers. Second, we investigate how to reduce human scoring workload by both fully automatic and computer-assisted scoring. The latter is a scenario where scoring is not done entirely automatically, but where a teacher receives scoring support, for example, by means of clustering similar answers together. Addressing the first aspect, we conduct a series of corpus annotation studies which highlight the relations between pairs of learner answers and target answers, as well as between both types of answers and the reading text they refer to. We annotate sentences from the reading text that were potentially used by learners or teachers for constructing answers and observe that, unsurprisingly, most correct answers can easily be linked to the text; incorrect answers often link to the text as well, but are often backed up by a part of the text not relevant to answer the question. Based on these findings, we create a new baseline scoring model which considers for correctness whether learners looked for an answer in the right place or not. After identifying those links into the text, we label the relation between learner answers and target answers as well as between reading texts and answers by annotating entailment relations. In contrast to the widespread assumption that scoring can be fully mapped to the task of recognizing textual entailment, we find the two tasks to be only closely related and not completely equivalent. Correct answers do often, but not always, entail the target answer, as well as part of the related text, and incorrect answers do most of the time not stand in an entailment relation to the target answer, but often have some overlap with the text. This close relatedness allows us to use gold-standard entailment information to improve the performance of automatic scoring. We also use links between learner answers and both reading texts and target answers in a statistical alignment-based scoring approach using methods from machine translation and reach a performance comparable to an existing knowledge-based alignment approach. Our investigations into how human scoring effort can be reduced when learner answers are manually scored by teachers are based on two methods: active learning and clustering. In the active learning approach, we score particularly informative items first, i.e., items from which a classifier can learn most, identifying them using uncertainty-based sample selection. In this way, we reach a higher performance with a given number of annotation steps compared to randomly selected answers. In the second research strand, we use clustering methods to group similar answers together, such that groups of answers can be scored in one scoring step. In doing so, the number of necessary labeling steps can be substantially reduced. When comparing clustering-based scoring to classical supervised machine learning setups, where the human annotations are used to train a classifier, supervised machine learning is still in the lead in terms of performance, whereas clusters provide the advantage of structured output. However, we are able to close part of the performance gap by means of supervised feature selection and semi-supervised clustering. In an additional study, we investigate the automatic processing of learner language with respect to the performance of part-of-speech (POS) tagging tools. We manually annotate a German reading comprehension corpus both with spelling normalization and POS information and find that the performance of automatic POS tagging can be improved by spell-checking the data using the reading text as additional evidence for lexical material intended in a learner answer.Short-Answer-Fragen sind ein weit verbreiteter Aufgabentyp in vielen Bildungsbereichen. Die Antworten, die Lerner zu solchen Aufgaben geben, werden von Lehrenden allein auf Grundlage ihres Inhalts bewertet; linguistische Korrektheit wird soweit möglich ignoriert. Diese Doktorarbeit legt ihren Schwerpunkt auf zwei Aspekte im Zusammenhang mit Short- Answer-Fragen und ihrer Bewertung: Zum einen betrachten wir ein Leseverständnisszenario, bei dem Studenten Fragen zu Lesetexten beantworten. Dabei untersuchen wir insbesondere die verschiedenen Beziehungen, die es zwischen Lesetexten, Lernerantworten und vom Lehrer erstellten Musterantworten gibt. Zum anderen untersuchen wir, wie der menschliche Bewertungsaufwand durch voll-automatisches und computergestütztes Bewerten reduziert werden kann. Bei letzterem handelt es sich um ein Szenario, in dem Lehrer bei der Bewertung unterstützt werden, z.B. indem ähnliche Antworten automatisch gruppiert werden. Zur Untersuchung des ersten Aspekts unternehmen wir eine Reihe von Korpusannotationsstudien, die sowohl die Beziehungen zwischen Lerner- und Musterantworten beleuchten, als auch die Beziehung zwischen diesen Antworten und dem Lesetext, auf den sie sich beziehen. Wir annotieren Sätze aus dem Lesetext, die vermutlich bei der Formulierung einer Antwort benutzt wurden und machen die zu erwartende Beobachtung, dass die meisten korrekten Antworten problemlos mit bestimmten Textpassagen in Verbindung gebracht werden können. Inkorrekte Antworten haben ebenfalls oft eine Verbindung zu bestimmten Textpassagen, die aber oft für die jeweilige Frage nicht relevant sind. Auf Grundlage dieser Erkenntnisse entwerfen wir ein neues Baseline-Bewertungsmodell, das für die Korrektheit einer Antwort nur in Betracht zieht, ob der Lerner die Antwort an der richtigen Stelle im Lesetext gesucht hat oder nicht. Nachdem wir diese Verbindungen in den Text identifiziert haben, annotieren wir die Relation zwischen Lerner- und Musterantworten und zwischen Texten und Antworten mit Entailment- Relationen. Im Gegensatz zur der weitverbreiteten Annahme, dass das Bewerten von Short- Answer-Fragen und das Erkennen von Textual-Entailment-Relationen zwischen Lerner und Musterantworten sich direkt entsprechen, finden wir heraus, dass die beiden Aufgaben nur nahe verwandt aber nicht vollständig äquivalent sind. Korrekte Antworten entailen meistens, aber nicht immer, die Musterantwort und auch den entsprechenden Satz im Lesetext. Inkorrekte Antworten stehen meist in keiner Entailmentrelation mit der Musterantwort, haben aber oft zumindest teilweisen Overlap mit dem Text. Diese nahe Verwandtschaft erlaubt es uns, Goldstandard-Entailmentinformation zu benutzen, um die Performanz beim automatischen Bewerten zu verbessern. Wir benutzen die annotierten Verbindungen zwischen Lesetexten und Antworten auch in einem Scoringansatz, der auf statistischem Alignment basiert und Methoden aus dem Bereich der maschinellen Übersetzung nutzt. Dabei erreichen wir eine Scoringgenauigkeit, die mit Ansätzen, die ein existierendes wissensbasiertes Alignment nutzen, vergleichbar ist. Unsere Untersuchungen, wie der Bewertungsaufwand beim Menschen verringert werden kann, wenn Antworten vom Lehrer manuell bewertet werden, basieren auf zwei Methoden: Active Learning und Clustering. Beim Active-Learning-Ansatz werden besonders informative Antworten vorrangig zur Bewertung ausgewählt, d.h. solche Antworten, von denen ein Klassifikator besonders viel lernen kann. Wir identifizieren solche Antworten durch Uncertainty-Sampling- Methoden und erreichen dadurch mit einer gegebenen Anzahl von Annotationsschritten eine höhere Klassifikationsgenauigkeit als mit zufällig ausgewählten Antworten. In unserem zweiten Forschungszweig nutzen wir Clusteringmethoden um ähnliche Antworten zu gruppieren, so dass Gruppen von Antworten in einem Annotationsschritt bewertet werden können. Dadurch kann die Anzahl der insgesamt nötigen Bewertungsschritte drastisch reduziert werden. Beim Vergleich zwischen clusteringbasierten Bewertungsverfahren und klassischem überwachten maschinellen Lernen, bei dem menschliche Annotationen dazu genutzt werden, einen Klassifikator zu trainieren, erbringen überwachte maschinelle Lernverfahren immer noch eine höhere Bewertungsgenauigkeit. Demgegenüber bringen Cluster den Vorteil eines strukturierten Outputs mit sich. Wir sind jedoch in der Lage, einen Teil diese Genauigkeitslücke zu schließen, in dem wir überwachte Featureauswahl und halbüberwachtes Clustering anwenden. In einer zusätzlichen Studie untersuchen wir die automatische Verarbeitung von Lernersprache im Hinblick auf die Performanz vonWerkzeugen für dasWortarten-Tagging. Wir annotieren ein deutsches Leseverstehenskorpus manuell sowohl mit Normalisierungsinformation in Bezug auf Rechtschreibung als auch mit Wortartinformation. Als Ergebnis der Studie finden wir, dass die Performanz bei der automatischen Wortartenzuweisung durch Rechtschreibkorrektur verbessert werden kann, insbesondere wenn wir den Lesetext als zusätzliche Evidenz dafür verwenden, welche Wörter der Leser in einer Antwort vermutlich benutzen wollte

Physics-Guided Deep Learning for Solar Wind Modeling at L1 Point

Neural networks are adept at finding patterns that are too long and too small for humans to find in data. Usually, this power is used to generate predictions with greater accuracy than most alternative models. However, we can also use this power to understand more about the data we train these networks on. We do this by changing the data that the networks train on and the data they are tested on. This allows us to both control the maximum length of a pattern and to compare data between different groups, in our case, different solar cycles. This thesis is our attempt to understand solar wind data better. We do this by proposing a physics based framework and comparing the results of different inputs and outputs through different networks. These results show three major things: 1, that training networks using the physical law of Ohm\u27s law for an ideal plasma can improve network performance predictions; 2, that the specific characteristics of different solar cycles make them more suitable for training or testing; and 3, that while physics guided loss functions can be helpful in certain situations, they are no silver bullet to improved predictions