48,123 research outputs found
Automatic Classification of Human Epithelial Type 2 Cell Indirect Immunofluorescence Images using Cell Pyramid Matching
This paper describes a novel system for automatic classification of images
obtained from Anti-Nuclear Antibody (ANA) pathology tests on Human Epithelial
type 2 (HEp-2) cells using the Indirect Immunofluorescence (IIF) protocol. The
IIF protocol on HEp-2 cells has been the hallmark method to identify the
presence of ANAs, due to its high sensitivity and the large range of antigens
that can be detected. However, it suffers from numerous shortcomings, such as
being subjective as well as time and labour intensive. Computer Aided
Diagnostic (CAD) systems have been developed to address these problems, which
automatically classify a HEp-2 cell image into one of its known patterns (eg.
speckled, homogeneous). Most of the existing CAD systems use handpicked
features to represent a HEp-2 cell image, which may only work in limited
scenarios. We propose a novel automatic cell image classification method termed
Cell Pyramid Matching (CPM), which is comprised of regional histograms of
visual words coupled with the Multiple Kernel Learning framework. We present a
study of several variations of generating histograms and show the efficacy of
the system on two publicly available datasets: the ICPR HEp-2 cell
classification contest dataset and the SNPHEp-2 dataset.Comment: arXiv admin note: substantial text overlap with arXiv:1304.126
Compositional Model based Fisher Vector Coding for Image Classification
Deriving from the gradient vector of a generative model of local features,
Fisher vector coding (FVC) has been identified as an effective coding method
for image classification. Most, if not all, FVC implementations employ the
Gaussian mixture model (GMM) to depict the generation process of local
features. However, the representative power of the GMM could be limited because
it essentially assumes that local features can be characterized by a fixed
number of feature prototypes and the number of prototypes is usually small in
FVC. To handle this limitation, in this paper we break the convention which
assumes that a local feature is drawn from one of few Gaussian distributions.
Instead, we adopt a compositional mechanism which assumes that a local feature
is drawn from a Gaussian distribution whose mean vector is composed as the
linear combination of multiple key components and the combination weight is a
latent random variable. In this way, we can greatly enhance the representative
power of the generative model of FVC. To implement our idea, we designed two
particular generative models with such a compositional mechanism.Comment: Fixed typos. 16 pages. Appearing in IEEE T. Pattern Analysis and
Machine Intelligence (TPAMI
Recent Advances in Transfer Learning for Cross-Dataset Visual Recognition: A Problem-Oriented Perspective
This paper takes a problem-oriented perspective and presents a comprehensive
review of transfer learning methods, both shallow and deep, for cross-dataset
visual recognition. Specifically, it categorises the cross-dataset recognition
into seventeen problems based on a set of carefully chosen data and label
attributes. Such a problem-oriented taxonomy has allowed us to examine how
different transfer learning approaches tackle each problem and how well each
problem has been researched to date. The comprehensive problem-oriented review
of the advances in transfer learning with respect to the problem has not only
revealed the challenges in transfer learning for visual recognition, but also
the problems (e.g. eight of the seventeen problems) that have been scarcely
studied. This survey not only presents an up-to-date technical review for
researchers, but also a systematic approach and a reference for a machine
learning practitioner to categorise a real problem and to look up for a
possible solution accordingly
DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs
In this work we address the task of semantic image segmentation with Deep
Learning and make three main contributions that are experimentally shown to
have substantial practical merit. First, we highlight convolution with
upsampled filters, or 'atrous convolution', as a powerful tool in dense
prediction tasks. Atrous convolution allows us to explicitly control the
resolution at which feature responses are computed within Deep Convolutional
Neural Networks. It also allows us to effectively enlarge the field of view of
filters to incorporate larger context without increasing the number of
parameters or the amount of computation. Second, we propose atrous spatial
pyramid pooling (ASPP) to robustly segment objects at multiple scales. ASPP
probes an incoming convolutional feature layer with filters at multiple
sampling rates and effective fields-of-views, thus capturing objects as well as
image context at multiple scales. Third, we improve the localization of object
boundaries by combining methods from DCNNs and probabilistic graphical models.
The commonly deployed combination of max-pooling and downsampling in DCNNs
achieves invariance but has a toll on localization accuracy. We overcome this
by combining the responses at the final DCNN layer with a fully connected
Conditional Random Field (CRF), which is shown both qualitatively and
quantitatively to improve localization performance. Our proposed "DeepLab"
system sets the new state-of-art at the PASCAL VOC-2012 semantic image
segmentation task, reaching 79.7% mIOU in the test set, and advances the
results on three other datasets: PASCAL-Context, PASCAL-Person-Part, and
Cityscapes. All of our code is made publicly available online.Comment: Accepted by TPAM
Convolutional Sparse Kernel Network for Unsupervised Medical Image Analysis
The availability of large-scale annotated image datasets and recent advances
in supervised deep learning methods enable the end-to-end derivation of
representative image features that can impact a variety of image analysis
problems. Such supervised approaches, however, are difficult to implement in
the medical domain where large volumes of labelled data are difficult to obtain
due to the complexity of manual annotation and inter- and intra-observer
variability in label assignment. We propose a new convolutional sparse kernel
network (CSKN), which is a hierarchical unsupervised feature learning framework
that addresses the challenge of learning representative visual features in
medical image analysis domains where there is a lack of annotated training
data. Our framework has three contributions: (i) We extend kernel learning to
identify and represent invariant features across image sub-patches in an
unsupervised manner. (ii) We initialise our kernel learning with a layer-wise
pre-training scheme that leverages the sparsity inherent in medical images to
extract initial discriminative features. (iii) We adapt a multi-scale spatial
pyramid pooling (SPP) framework to capture subtle geometric differences between
learned visual features. We evaluated our framework in medical image retrieval
and classification on three public datasets. Our results show that our CSKN had
better accuracy when compared to other conventional unsupervised methods and
comparable accuracy to methods that used state-of-the-art supervised
convolutional neural networks (CNNs). Our findings indicate that our
unsupervised CSKN provides an opportunity to leverage unannotated big data in
medical imaging repositories.Comment: Accepted by Medical Image Analysis (with a new title 'Convolutional
Sparse Kernel Network for Unsupervised Medical Image Analysis'). The
manuscript is available from following link
(https://doi.org/10.1016/j.media.2019.06.005
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