E-BioFlow: Different Perspectives on Scientific Workflows

We introduce a new type of workflow design system called\ud e-BioFlow and illustrate it by means of a simple sequence alignment workflow. E-BioFlow, intended to model advanced scientific workflows, enables the user to model a workflow from three different but strongly coupled perspectives: the control flow perspective, the data flow perspective, and the resource perspective. All three perspectives are of\ud equal importance, but workflow designers from different domains prefer different perspectives as entry points for their design, and a single workflow designer may prefer different perspectives in different stages of workflow design. Each perspective provides its own type of information, visualisation and support for validation. Combining these three perspectives in a single application provides a new and flexible way of modelling workflows

A Rule-Based Approach to Analyzing Database Schema Objects with Datalog

Database schema elements such as tables, views, triggers and functions are typically defined with many interrelationships. In order to support database users in understanding a given schema, a rule-based approach for analyzing the respective dependencies is proposed using Datalog expressions. We show that many interesting properties of schema elements can be systematically determined this way. The expressiveness of the proposed analysis is exemplarily shown with the problem of computing induced functional dependencies for derived relations. The propagation of functional dependencies plays an important role in data integration and query optimization but represents an undecidable problem in general. And yet, our rule-based analysis covers all relational operators as well as linear recursive expressions in a systematic way showing the depth of analysis possible by our proposal. The analysis of functional dependencies is well-integrated in a uniform approach to analyzing dependencies between schema elements in general.Comment: Pre-proceedings paper presented at the 27th International Symposium on Logic-Based Program Synthesis and Transformation (LOPSTR 2017), Namur, Belgium, 10-12 October 2017 (arXiv:1708.07854

Why is the snowflake schema a good data warehouse design?

Database design for data warehouses is based on the notion of the snowflake schema and its important special case, the star schema. The snowflake schema represents a dimensional model which is composed of a central fact table and a set of constituent dimension tables which can be further broken up into subdimension tables. We formalise the concept of a snowflake schema in terms of an acyclic database schema whose join tree satisfies certain structural properties. We then define a normal form for snowflake schemas which captures its intuitive meaning with respect to a set of functional and inclusion dependencies. We show that snowflake schemas in this normal form are independent as well as separable when the relation schemas are pairwise incomparable. This implies that relations in the data warehouse can be updated independently of each other as long as referential integrity is maintained. In addition, we show that a data warehouse in snowflake normal form can be queried by joining the relation over the fact table with the relations over its dimension and subdimension tables. We also examine an information-theoretic interpretation of the snowflake schema and show that the redundancy of the primary key of the fact table is zero

Query Rewriting and Optimization for Ontological Databases

Ontological queries are evaluated against a knowledge base consisting of an extensional database and an ontology (i.e., a set of logical assertions and constraints which derive new intensional knowledge from the extensional database), rather than directly on the extensional database. The evaluation and optimization of such queries is an intriguing new problem for database research. In this paper, we discuss two important aspects of this problem: query rewriting and query optimization. Query rewriting consists of the compilation of an ontological query into an equivalent first-order query against the underlying extensional database. We present a novel query rewriting algorithm for rather general types of ontological constraints which is well-suited for practical implementations. In particular, we show how a conjunctive query against a knowledge base, expressed using linear and sticky existential rules, that is, members of the recently introduced Datalog+/- family of ontology languages, can be compiled into a union of conjunctive queries (UCQ) against the underlying database. Ontological query optimization, in this context, attempts to improve this rewriting process so to produce possibly small and cost-effective UCQ rewritings for an input query.Comment: arXiv admin note: text overlap with arXiv:1312.5914 by other author

Aspect-Oriented Programming

Aspect-oriented programming is a promising idea that can improve the quality of software by reduce the problem of code tangling and improving the separation of concerns. At ECOOP'97, the first AOP workshop brought together a number of researchers interested in aspect-orientation. At ECOOP'98, during the second AOP workshop the participants reported on progress in some research topics and raised more issues that were further discussed. \ud \ud This year, the ideas and concepts of AOP have been spread and adopted more widely, and, accordingly, the workshop received many submissions covering areas from design and application of aspects to design and implementation of aspect languages