Network module detection: Affinity search technique with the multi-node topological overlap measure

<p>Abstract</p> <p>Background</p> <p>Many clustering procedures only allow the user to input a <it>pairwise </it>dissimilarity or distance measure between objects. We propose a clustering method that can input a multi-point dissimilarity measure d(i1, i2, ..., iP) where the number of points P can be larger than 2. The work is motivated by gene network analysis where clusters correspond to modules of highly interconnected nodes. Here, we define modules as clusters of network nodes with high <it>multi-node </it>topological overlap. The topological overlap measure is a robust measure of interconnectedness which is based on shared network neighbors. In previous work, we have shown that the multi-node topological overlap measure yields biologically meaningful results when used as input of network neighborhood analysis.</p> <p>Findings</p> <p>We adapt network neighborhood analysis for the use of module detection. We propose the Module Affinity Search Technique (MAST), which is a generalized version of the Cluster Affinity Search Technique (CAST). MAST can accommodate a multi-node dissimilarity measure. Clusters grow around user-defined or automatically chosen seeds (e.g. hub nodes). We propose both local and global cluster growth stopping rules. We use several simulations and a gene co-expression network application to argue that the MAST approach leads to biologically meaningful results. We compare MAST with hierarchical clustering and partitioning around medoid clustering.</p> <p>Conclusion</p> <p>Our flexible module detection method is implemented in the MTOM software which can be downloaded from the following webpage: <url>http://www.genetics.ucla.edu/labs/horvath/MTOM/</url></p

Multi-Scale Link Prediction

The automated analysis of social networks has become an important problem due to the proliferation of social networks, such as LiveJournal, Flickr and Facebook. The scale of these social networks is massive and continues to grow rapidly. An important problem in social network analysis is proximity estimation that infers the closeness of different users. Link prediction, in turn, is an important application of proximity estimation. However, many methods for computing proximity measures have high computational complexity and are thus prohibitive for large-scale link prediction problems. One way to address this problem is to estimate proximity measures via low-rank approximation. However, a single low-rank approximation may not be sufficient to represent the behavior of the entire network. In this paper, we propose Multi-Scale Link Prediction (MSLP), a framework for link prediction, which can handle massive networks. The basis idea of MSLP is to construct low rank approximations of the network at multiple scales in an efficient manner. Based on this approach, MSLP combines predictions at multiple scales to make robust and accurate predictions. Experimental results on real-life datasets with more than a million nodes show the superior performance and scalability of our method.Comment: 20 pages, 10 figure

Fronthaul-Constrained Cloud Radio Access Networks: Insights and Challenges

As a promising paradigm for fifth generation (5G) wireless communication systems, cloud radio access networks (C-RANs) have been shown to reduce both capital and operating expenditures, as well as to provide high spectral efficiency (SE) and energy efficiency (EE). The fronthaul in such networks, defined as the transmission link between a baseband unit (BBU) and a remote radio head (RRH), requires high capacity, but is often constrained. This article comprehensively surveys recent advances in fronthaul-constrained C-RANs, including system architectures and key techniques. In particular, key techniques for alleviating the impact of constrained fronthaul on SE/EE and quality of service for users, including compression and quantization, large-scale coordinated processing and clustering, and resource allocation optimization, are discussed. Open issues in terms of software-defined networking, network function virtualization, and partial centralization are also identified.Comment: 5 Figures, accepted by IEEE Wireless Communications. arXiv admin note: text overlap with arXiv:1407.3855 by other author

Human Detection and Tracking for Video Surveillance A Cognitive Science Approach

With crimes on the rise all around the world, video surveillance is becoming more important day by day. Due to the lack of human resources to monitor this increasing number of cameras manually new computer vision algorithms to perform lower and higher level tasks are being developed. We have developed a new method incorporating the most acclaimed Histograms of Oriented Gradients the theory of Visual Saliency and the saliency prediction model Deep Multi Level Network to detect human beings in video sequences. Furthermore we implemented the k Means algorithm to cluster the HOG feature vectors of the positively detected windows and determined the path followed by a person in the video. We achieved a detection precision of 83.11% and a recall of 41.27%. We obtained these results 76.866 times faster than classification on normal images.Comment: ICCV 2017 Venice, Italy Pages 5 Figures