Consultation on fish genetic resources

Naturally occurring fish genetic resources are of great importance for fisheries and aquaculture. Fish farmers and fishers face a future in which the diversity of their basic resources is under threat and the genetic composition of these resources will be increasingly reliant on human protection and manipulation. Fish genetic resources research, information and training in the context of existing and future activities are discussed.Fishery resources, Genetic resources, Germplasm conservation Pisces

Survey of fish protective facilities at water withdrawal sites on the Snake and Columbia Rivers

Proliferation of water withdrawals and new pump intake and screen designs has occurred with the growth of irrigated agriculture along the Columbia and Snake Rivers. Concern for the protection of anadromous and resident fish populations resulted in formulation of a survey of the water withdrawal systems. The survey included distribution studies of juvenile fish near pump sites and field inspection of those sites to determine adequacy of screening for protection of fish. A total of 225 sites were inspected in 1979 and 1980, with a follow-up inspection of 95 sites in 1982. Results indicated a definite trend toward lack of concern for the condition of fish protective facilities. Only 4 out of 22 sites not meeting criteria in 1979 had been upgraded to acceptable conditions. Of more concern, 13 of the sites meeting criteria in 1979 were below criteria when reinspected in 1982. Some of the discrepancies included lack of protective screens, poorly maintained screens, and screens permitting excessive velocity that could result in impingement of larvae or small fish. A conclusion from these surveys is that if adequate protection for fish is to exist, screens for water withdrawals need to be properly installed, inspected, and maintained. (PDF file contains 40 pages.

Dissolved Oxygen Monitoring in Kings River and Leatherwood Creek

The Clean Water Act (CWA) establishes the basic structure used to regulate water quality. Under the CWA, States are required to assess water bodies relative to water‐quality standards and designated beneficial uses and then to submit lists of impaired bodies every other year to the US Environmental Protection Agency (USEPA). In 2015, at least 4,800 water bodies were listed as impaired by dissolved oxygen across the US (USEPA, 2015). Aquatic species like fish and macroinvertebrates depend on adequate dissolved oxygen for survival. Low dissolved oxygen can lead to fish kills, reduced aquatic diversity, and nuisance smells from anaerobic conditions – ultimately, low dissolved oxygen concentrations result in water bodies not being able to meet the aquatic life designated use

European sea bass (Dicentrarchus labrax) skin and scale transcriptomes

Fish skin and their appendages, the mineralized scales, are important organs for protection and homeostasis, but little is known about their specific transcript or protein repertoire. This study used RNA-seq to generate transcriptome data for skin and scales in the European sea bass (Dicentrarchus labrax), an important species for fisheries and aquaculture. RNA was extracted from the pectoral skin and from scales collected above the midline of immature one-year old sea bass. More than 20 x 10(6) reads were obtained for each tissue, using RNA-seq Illumina technology. De novo assembly resulted in 31,842 transcripts (of 500 base pairs or greater) for skin and 20,423 transcripts for scale. This dataset provides a useful resource for both aquaculture and fish conservation studies and for research into the physiology and molecular biology of fish skin and scales. (C) 2017 Elsevier B.V. All rights reserved.Foundation for Science and Technology of Portugal (FCT) [PTDC/AAG-GLO/4003/2012, CCMAR/Multi/04326/2013, SFRH/BPD/84033/2012

Soft-bottom fishes and spatial protection: findings from a temperate marine protected area

Numerous studies over the last decades have focused on marine protected areas (MPAs) and their effects on fish communities. However, there is a knowledge gap regarding how species that live associated with soft-substrates (e.g., sand, mud) respond to spatial protection. We analyzed abundance, biomass and total lengths of the soft-bottom fishes in a multiple-use MPA in the north-eastern Atlantic, the Luiz Saldanha Marine Park (Portugal), during and after the implementation of its management plan. Data were collected by experimental fishing in areas with three different levels of protection, during the implementation period and for three years after full implementation of the MPA. Univariate analysis detected significant biomass increases between the two periods. Fish assemblages were mainly structured by depth and substrate, followed by protection level. Community composition analyses revealed significant differences between protection levels and between the two periods. Species exhibited a broad variation in their response to protection, and we hypothesize that factors such as species habitat preferences, body size and late maturity might be underlying determinants. Overall, this study provides some evidence of protection effectiveness in soft-bottom fish communities, supported by the significant increase in biomass in the protected areas and the positive trends of some species.project LIFE-BIOMARES [LIFE06 NAT/P/000192]; project BUFFER (ERA-Net BiodivERsA); company SECIL-Companhia Geral de Cal e Cimento S.A.; FCT-Foundation for Science and Technology [CCMAR/Multi/04326/2013, SFRH/BD/80771/2011]; Foundation for Science and Technology [SFRH/BD/80771/2011]; 2012 Sesimbra Scientific Priz

Cuban Land Use and Conservation, from Rainforests to Coral Reefs

Cuba is an ecological rarity in Latin America and the Caribbean. Its complex political and economic history shows limited disturbances, extinctions, pollution, and resource depletion by legal or de facto measures. Vast mangroves, wetlands, and forests play key roles in protecting biodiversity and reducing risks of hazards caused or aggravated by climate change. Cuba boasts coral reefs with some of the region’s greatest fish biomass and coral cover. Although Cuba has set aside major protected areas that safeguard a host of endemic species, its environment is by no means pristine. Its early history is one of deforestation and agricultural production for colonial and neo-colonial powers. Using remote sensing, we find Cuba’s land today is 45% devoted to agricultural, pasturage, and crop production. Roughly 77% of Cuba’s potential mangrove zone is presently in mangrove cover, much outside legal protection; this is likely the most intact Caribbean mangrove ecosystem and an important resource for coastal protection, fish nurseries, and wildlife habitat. Even the largest watersheds with the most agricultural land uses have a strong presence of forests, mangroves, and wetlands to buffer and filter runoff. This landscape could change with Cuba’s gradual reopening to foreign investment and growing popularity among tourists—trends that have devastated natural ecosystems throughout the Caribbean. Cuba is uniquely positioned to avoid and reverse ecosystem collapse if discontinuities between geopolitical and ecosystem functional units are be addressed, if protection and conservation of endemic species and ecosystems services accompany new development, and if a sound ecological restoration plan is enacted

The importance of habitat quality for marine reserve fishery linkages

We model marine reserve - fishery linkages to evaluate the potential contribution of habitat-quality improvements inside a marine reserve to fish productivity and fishery catches. Data from Mombasa Marine National Park, Kenya, and the adjacent fishery are used. Marine reserves increase total fish biomass directly by providing refuge from exploitation and indirectly by improving fish habitat in the reserve. As natural mortality of the fish stock decreases in response to habitat enhancement in the reserve, catches increase by up to 2.6 tonnes (t).km(-2).year(-1) and total fish biomass by up to 36 t.km(-2). However, if habitat-quality improvement reduces the propensity of fish to move out of the reserve, catches may fall by up to 0.9 t.km(-2).year(-1). Our results indicate that habitat protection in reserves can underpin fish productivity and, depending on its effects on fish movements, augment catches

Estimating Linkages between Redfish and Cold Water Coral on the Norwegian Coast

The importance of essential fish habitat in supporting commercial fisheries has received increasing attention in recent years. Bottom trawling is known to cause particularly destructive damage to habitat that is effectively non-renewable, such as cold water corals. This paper applies the production function approach to estimate the link between cold water corals and redfish in Norway. Both the carrying capacity and growth rate of redfish are found to be functions of cold water coral habitat and thus cold water corals can be considered an essential fish habitat. The paper also estimates a facultative relationship between cold water coral and redfish stocks. The essential habitat model shows the best fit to the data. Comparative statics of an essential habitat indicate an approximate annual loss in harvest of between 11 and 29% within the bounds of coral decline estimated by scientists. In terms of policy, our results indicate that essential fish habitat protection should be considered when managing commercially important species.Cold water coral, redfish, production function, habitat-fishery linkages, essential fish habitat, International Development, Research Methods/ Statistical Methods, Q22,

Natural resources of Lake Earl and Smith River Delta

The Lake Earl/Smith River Delta area is a key coastal wetland situated in northern California. The Lake and Delta have retained much of their value to wildlife and serve as an important link in a chain of such wetlands that extend southward along the Pacific Ocean from Alaska to South America. Millions of water-associated birds of the Pacific Flyway utilize these areas as feeding and resting stops along their migration paths. In California, these wetlands also serve as a significant portion of the available wintering grounds for a major share of the birds within the flyway. The Smith River is also one of the State's most productive salmon and steelhead streams. Anadromous fish produced here provide thousands of angler use days to sport fishermen and contribute substantially to the commercial fishing catch off the northern coast. Because of the importance of coastal wetlands to the fish and wildlife of California, the Department of Fish and Game has initiated a high priority statewide inventory and assessment of these wetlands. This publication is an integral part of that program. This report identifies specific resources and uses; directs attention to problems; and recommends courses of action needed to insure resource protection. It is intended as a guide for citizens, planners, administrators and other interested in the use and development of California's coastal land and waters. (132pp.