Few-shot classification in Named Entity Recognition Task

For many natural language processing (NLP) tasks the amount of annotated data is limited. This urges a need to apply semi-supervised learning techniques, such as transfer learning or meta-learning. In this work we tackle Named Entity Recognition (NER) task using Prototypical Network - a metric learning technique. It learns intermediate representations of words which cluster well into named entity classes. This property of the model allows classifying words with extremely limited number of training examples, and can potentially be used as a zero-shot learning method. By coupling this technique with transfer learning we achieve well-performing classifiers trained on only 20 instances of a target class.Comment: In proceedings of the 34th ACM/SIGAPP Symposium on Applied Computin

Named Entity Recognition in Electronic Health Records Using Transfer Learning Bootstrapped Neural Networks

Neural networks (NNs) have become the state of the art in many machine learning applications, especially in image and sound processing [1]. The same, although to a lesser extent [2,3], could be said in natural language processing (NLP) tasks, such as named entity recognition. However, the success of NNs remains dependent on the availability of large labelled datasets, which is a significant hurdle in many important applications. One such case are electronic health records (EHRs), which are arguably the largest source of medical data, most of which lies hidden in natural text [4,5]. Data access is difficult due to data privacy concerns, and therefore annotated datasets are scarce. With scarce data, NNs will likely not be able to extract this hidden information with practical accuracy. In our study, we develop an approach that solves these problems for named entity recognition, obtaining 94.6 F1 score in I2B2 2009 Medical Extraction Challenge [6], 4.3 above the architecture that won the competition. Beyond the official I2B2 challenge, we further achieve 82.4 F1 on extracting relationships between medical terms. To reach this state-of-the-art accuracy, our approach applies transfer learning to leverage on datasets annotated for other I2B2 tasks, and designs and trains embeddings that specially benefit from such transfer.Comment: 11 pages, 4 figures, 8 table

W-procer: Weighted Prototypical Contrastive Learning for Medical Few-Shot Named Entity Recognition

Contrastive learning has become a popular solution for few-shot Name Entity Recognization (NER). The conventional configuration strives to reduce the distance between tokens with the same labels and increase the distance between tokens with different labels. The effect of this setup may, however, in the medical domain, there are a lot of entities annotated as OUTSIDE (O), and they are undesirably pushed apart to other entities that are not labeled as OUTSIDE (O) by the current contrastive learning method end up with a noisy prototype for the semantic representation of the label, though there are many OUTSIDE (O) labeled entities are relevant to the labeled entities. To address this challenge, we propose a novel method named Weighted Prototypical Contrastive Learning for Medical Few Shot Named Entity Recognization (W-PROCER). Our approach primarily revolves around constructing the prototype-based contractive loss and weighting network. These components play a crucial role in assisting the model in differentiating the negative samples from OUTSIDE (O) tokens and enhancing the discrimination ability of contrastive learning. Experimental results show that our proposed W-PROCER framework significantly outperforms the strong baselines on the three medical benchmark datasets

Comprehensive Overview of Named Entity Recognition: Models, Domain-Specific Applications and Challenges

In the domain of Natural Language Processing (NLP), Named Entity Recognition (NER) stands out as a pivotal mechanism for extracting structured insights from unstructured text. This manuscript offers an exhaustive exploration into the evolving landscape of NER methodologies, blending foundational principles with contemporary AI advancements. Beginning with the rudimentary concepts of NER, the study spans a spectrum of techniques from traditional rule-based strategies to the contemporary marvels of transformer architectures, particularly highlighting integrations such as BERT with LSTM and CNN. The narrative accentuates domain-specific NER models, tailored for intricate areas like finance, legal, and healthcare, emphasizing their specialized adaptability. Additionally, the research delves into cutting-edge paradigms including reinforcement learning, innovative constructs like E-NER, and the interplay of Optical Character Recognition (OCR) in augmenting NER capabilities. Grounding its insights in practical realms, the paper sheds light on the indispensable role of NER in sectors like finance and biomedicine, addressing the unique challenges they present. The conclusion outlines open challenges and avenues, marking this work as a comprehensive guide for those delving into NER research and applications