Evaluation of Natural Language Tools for Italian: EVALITA 2007

EVALITA 2007, the first edition of the initiative devoted to the evaluation of Natural Language Processing tools for Italian, provided a shared framework where participants\u2019 systems had the possibility to be evaluated on five different tasks, namely Part of Speech Tagging (organised by the University of Bologna), Parsing (organised by the University of Torino), Word Sense Disambiguation (organised by CNR-ILC, Pisa), Temporal Expression Recognition and Normalization (organised by CELCT, Trento), and Named Entity Recognition (organised by FBK, Trento). We believe that the diffusion of shared tasks and shared evaluation practices is a crucial step towards the development of resources and tools for Natural Language Processing. Experiences of this kind, in fact, are a valuable contribution to the validation of existing models and data, allowing for consistent comparisons among approaches and among representation schemes. The good response obtained by EVALITA, both in the number of participants and in the quality of results, showed that pursuing such goals is feasible not only for English, but also for other languages

Evaluation of Natural Language Tools for Italian: EVALITA 2007

EVALITA 2007, the first edition of the initiative devoted to the evaluation of Natural Language Processing tools for Italian, provided a shared framework where participants? systems had the possibility to be evaluated on five different tasks, namely Part of Speech Tagging (organised by the University of Bologna), Parsing (organised by the University of Torino), Word Sense Disambiguation (organised by CNR-ILC, Pisa), Temporal Expression Recognition and Normalization (organised by CELCT, Trento), and Named Entity Recognition (organised by FBK, Trento). We believe that the diffusion of shared tasks and shared evaluation practices is a crucial step towards the development of resources and tools for Natural Language Processing. Experiences of this kind, in fact, are a valuable contribution to the validation of existing models and data, allowing for consistent comparisons among approaches and among representation schemes. The good response obtained by EVALITA, both in the number of participants and in the quality of results, showed that pursuing such goals is feasible not only for English, but also for other languages

Semantic resources in pharmacovigilance: a corpus and an ontology for drug-drug interactions

Mención Internacional en el título de doctorNowadays, with the increasing use of several drugs for the treatment of one or more different diseases (polytherapy) in large populations, the risk for drugs combinations that have not been studied in pre-authorization clinical trials has increased. This provides a favourable setting for the occurrence of drug-drug interactions (DDIs), a common adverse drug reaction (ADR) representing an important risk to patients safety, and an increase in healthcare costs. Their early detection is, therefore, a main concern in the clinical setting. Although there are different databases supporting healthcare professionals in the detection of DDIs, the quality of these databases is very uneven, and the consistency of their content is limited. Furthermore, these databases do not scale well to the large and growing number of pharmacovigilance literature in recent years. In addition, large amounts of current and valuable information are hidden in published articles, scientific journals, books, and technical reports. Thus, the large number of DDI information sources has overwhelmed most healthcare professionals because it is not possible to remain up to date on everything published about DDIs. Computational methods can play a key role in the identification, explanation, and prediction of DDIs on a large scale, since they can be used to collect, analyze and manipulate large amounts of biological and pharmacological data. Natural language processing (NLP) techniques can be used to retrieve and extract DDI information from pharmacological texts, supporting researchers and healthcare professionals on the challenging task of searching DDI information among different and heterogeneous sources. However, these methods rely on the availability of specific resources providing the domain knowledge, such as databases, terminological vocabularies, corpora, ontologies, and so forth, which are necessary to address the Information Extraction (IE) tasks. In this thesis, we have developed two semantic resources for the DDI domain that make an important contribution to the research and development of IE systems for DDIs. We have reviewed and analyzed the existing corpora and ontologies relevant to this domain, based on their strengths and weaknesses, we have developed the DDI corpus and the ontology for drug-drug interactions (named DINTO). The DDI corpus has proven to fulfil the characteristics of a high-quality gold-standard, and has demonstrated its usefulness as a benchmark for the training and testing of different IE systems in the SemEval-2013 DDIExtraction shared task. Meanwhile, DINTO has been used and evaluated in two different applications. Firstly, it has been proven that the knowledge represented in the ontology can be used to infer DDIs and their different mechanisms. Secondly, we have provided a proof-of-concept of the contribution of DINTO to NLP, by providing the domain knowledge to be exploited by an IE pilot prototype. From these results, we believe that these two semantic resources will encourage further research into the application of computational methods to the early detection of DDIs. This work has been partially supported by the Regional Government of Madrid under the Research Network MA2VICMR [S2009/TIC-1542], by the Spanish Ministry of Education under the project MULTIMEDICA [TIN2010-20644-C03-01] and by the European Commission Seventh Framework Programme under TrendMiner project [FP7-ICT287863].Hoy en día ha habido un notable aumento del número de pacientes polimedicados que reciben simultáneamente varios fármacos para el tratamiento de una o varias enfermedades. Esta situación proporciona el escenario ideal para la prescripción de combinaciones de fármacos que no han sido estudiadas previamente en ensayos clínicos, y puede dar lugar a un aumento de interacciones farmacológicas (DDIs por sus siglas en inglés). Las interacciones entre fármacos son un tipo de reacción adversa que supone no sólo un riesgo para los pacientes, sino también una importante causa de aumento del gasto sanitario. Por lo tanto, su detección temprana es crucial en la práctica clínica. En la actualidad existen diversos recursos y bases de datos que pueden ayudar a los profesionales sanitarios en la detección de posibles interacciones farmacológicas. Sin embargo, la calidad de su información varía considerablemente de unos a otros, y la consistencia de sus contenidos es limitada. Además, la actualización de estos recursos es difícil debido al aumento que ha experimentado la literatura farmacológica en los últimos años. De hecho, mucha información sobre DDIs se encuentra dispersa en artículos, revistas científicas, libros o informes técnicos, lo que ha hecho que la mayoría de los profesionales sanitarios se hayan visto abrumados al intentar mantenerse actualizados en el dominio de las interacciones farmacológicas. La ingeniería informática puede representar un papel fundamental en este campo permitiendo la identificación, explicación y predicción de DDIs, ya que puede ayudar a recopilar, analizar y manipular grandes cantidades de datos biológicos y farmacológicos. En concreto, las técnicas del procesamiento del lenguaje natural (PLN) pueden ayudar a recuperar y extraer información sobre DDIs de textos farmacológicos, ayudando a los investigadores y profesionales sanitarios en la complicada tarea de buscar esta información en diversas fuentes. Sin embargo, el desarrollo de estos métodos depende de la disponibilidad de recursos específicos que proporcionen el conocimiento del dominio, como bases de datos, vocabularios terminológicos, corpora u ontologías, entre otros, que son necesarios para desarrollar las tareas de extracción de información (EI). En el marco de esta tesis hemos desarrollado dos recursos semánticos en el dominio de las interacciones farmacológicas que suponen una importante contribución a la investigación y al desarrollo de sistemas de EI sobre DDIs. En primer lugar hemos revisado y analizado los corpora y ontologías existentes relevantes para el dominio y, en base a sus potenciales y limitaciones, hemos desarrollado el corpus DDI y la ontología para interacciones farmacológicas DINTO. El corpus DDI ha demostrado cumplir con las características de un estándar de oro de gran calidad, así como su utilidad para el entrenamiento y evaluación de distintos sistemas en la tarea de extracción de información SemEval-2013 DDIExtraction Task. Por su parte, DINTO ha sido utilizada y evaluada en dos aplicaciones diferentes. En primer lugar, hemos demostrado que esta ontología puede ser utilizada para inferir interacciones entre fármacos y los mecanismos por los que ocurren. En segundo lugar, hemos obtenido una primera prueba de concepto de la contribución de DINTO al área del PLN al proporcionar el conocimiento del dominio necesario para ser explotado por un prototipo de un sistema de EI. En vista de estos resultados, creemos que estos dos recursos semánticos pueden estimular la investigación en el desarrollo de métodos computaciones para la detección temprana de DDIs. Este trabajo ha sido financiado parcialmente por el Gobierno Regional de Madrid a través de la red de investigación MA2VICMR [S2009/TIC-1542], por el Ministerio de Educación Español, a través del proyecto MULTIMEDICA [TIN2010-20644-C03-01], y por el Séptimo Programa Macro de la Comisión Europea a través del proyecto TrendMiner [FP7-ICT287863].This work has been partially supported by the Regional Government of Madrid under the Research Network MA2VICMR [S2009/TIC-1542], by the Spanish Ministry of Education under the project MULTIMEDICA [TIN2010-20644-C03-01] and by the European Commission Seventh Framework Programme under TrendMiner project [FP7-ICT287863].Programa Oficial de Doctorado en Ciencia y Tecnología InformáticaPresidente: Asunción Gómez Pérez.- Secretario: María Belén Ruiz Mezcua.- Vocal: Mariana Neve

Proceedings of the Workshop Semantic Content Acquisition and Representation (SCAR) 2007

This is the proceedings of the Workshop on Semantic Content Acquisition and Representation, held in conjunction with NODALIDA 2007, on May 24 2007 in Tartu, Estonia.</p

The European Language Resources and Technologies Forum: Shaping the Future of the Multilingual Digital Europe

Proceedings of the 1st FLaReNet Forum on the European Language Resources and Technologies, held in Vienna, at the Austrian Academy of Science, on 12-13 February 2009

Toponym Disambiguation in Information Retrieval

In recent years, geography has acquired a great importance in the context of Information Retrieval (IR) and, in general, of the automated processing of information in text. Mobile devices that are able to surf the web and at the same time inform about their position are now a common reality, together with applications that can exploit this data to provide users with locally customised information, such as directions or advertisements. Therefore, it is important to deal properly with the geographic information that is included in electronic texts. The majority of such kind of information is contained as place names, or toponyms. Toponym ambiguity represents an important issue in Geographical Information Retrieval (GIR), due to the fact that queries are geographically constrained. There has been a struggle to nd speci c geographical IR methods that actually outperform traditional IR techniques. Toponym ambiguity may constitute a relevant factor in the inability of current GIR systems to take advantage from geographical knowledge. Recently, some Ph.D. theses have dealt with Toponym Disambiguation (TD) from di erent perspectives, from the development of resources for the evaluation of Toponym Disambiguation (Leidner (2007)) to the use of TD to improve geographical scope resolution (Andogah (2010)). The Ph.D. thesis presented here introduces a TD method based on WordNet and carries out a detailed study of the relationship of Toponym Disambiguation to some IR applications, such as GIR, Question Answering (QA) and Web retrieval. The work presented in this thesis starts with an introduction to the applications in which TD may result useful, together with an analysis of the ambiguity of toponyms in news collections. It could not be possible to study the ambiguity of toponyms without studying the resources that are used as placename repositories; these resources are the equivalent to language dictionaries, which provide the di erent meanings of a given word.Buscaldi, D. (2010). Toponym Disambiguation in Information Retrieval [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/8912Palanci

Classifying Relations using Recurrent Neural Network with Ontological-Concept Embedding

Relation extraction and classification represents a fundamental and challenging aspect of Natural Language Processing (NLP) research which depends on other tasks such as entity detection and word sense disambiguation. Traditional relation extraction methods based on pattern-matching using regular expressions grammars and lexico-syntactic pattern rules suffer from several drawbacks including the labor involved in handcrafting and maintaining large number of rules that are difficult to reuse. Current research has focused on using Neural Networks to help improve the accuracy of relation extraction tasks using a specific type of Recurrent Neural Network (RNN). A promising approach for relation classification uses an RNN that incorporates an ontology-based concept embedding layer in addition to word embeddings. This dissertation presents several improvements to this approach by addressing its main limitations. First, several different types of semantic relationships between concepts are incorporated into the model; prior work has only considered is-a hierarchical relationships. Secondly, a significantly larger vocabulary of concepts is used. Thirdly, an improved method for concept matching was devised. The results of adding these improvements to two state-of-the-art baseline models demonstrated an improvement to accuracy when evaluated on benchmark data used in prior studies