Core Decomposition in Multilayer Networks: Theory, Algorithms, and Applications

Multilayer networks are a powerful paradigm to model complex systems, where multiple relations occur between the same entities. Despite the keen interest in a variety of tasks, algorithms, and analyses in this type of network, the problem of extracting dense subgraphs has remained largely unexplored so far. In this work we study the problem of core decomposition of a multilayer network. The multilayer context is much challenging as no total order exists among multilayer cores; rather, they form a lattice whose size is exponential in the number of layers. In this setting we devise three algorithms which differ in the way they visit the core lattice and in their pruning techniques. We then move a step forward and study the problem of extracting the inner-most (also known as maximal) cores, i.e., the cores that are not dominated by any other core in terms of their core index in all the layers. Inner-most cores are typically orders of magnitude less than all the cores. Motivated by this, we devise an algorithm that effectively exploits the maximality property and extracts inner-most cores directly, without first computing a complete decomposition. Finally, we showcase the multilayer core-decomposition tool in a variety of scenarios and problems. We start by considering the problem of densest-subgraph extraction in multilayer networks. We introduce a definition of multilayer densest subgraph that trades-off between high density and number of layers in which the high density holds, and exploit multilayer core decomposition to approximate this problem with quality guarantees. As further applications, we show how to utilize multilayer core decomposition to speed-up the extraction of frequent cross-graph quasi-cliques and to generalize the community-search problem to the multilayer setting

GCG: Mining Maximal Complete Graph Patterns from Large Spatial Data

Recent research on pattern discovery has progressed from mining frequent patterns and sequences to mining structured patterns, such as trees and graphs. Graphs as general data structure can model complex relations among data with wide applications in web exploration and social networks. However, the process of mining large graph patterns is a challenge due to the existence of large number of subgraphs. In this paper, we aim to mine only frequent complete graph patterns. A graph g in a database is complete if every pair of distinct vertices is connected by a unique edge. Grid Complete Graph (GCG) is a mining algorithm developed to explore interesting pruning techniques to extract maximal complete graphs from large spatial dataset existing in Sloan Digital Sky Survey (SDSS) data. Using a divide and conquer strategy, GCG shows high efficiency especially in the presence of large number of patterns. In this paper, we describe GCG that can mine not only simple co-location spatial patterns but also complex ones. To the best of our knowledge, this is the first algorithm used to exploit the extraction of maximal complete graphs in the process of mining complex co-location patterns in large spatial dataset.Comment: 1

Robust Subgraph Generation Improves Abstract Meaning Representation Parsing

The Abstract Meaning Representation (AMR) is a representation for open-domain rich semantics, with potential use in fields like event extraction and machine translation. Node generation, typically done using a simple dictionary lookup, is currently an important limiting factor in AMR parsing. We propose a small set of actions that derive AMR subgraphs by transformations on spans of text, which allows for more robust learning of this stage. Our set of construction actions generalize better than the previous approach, and can be learned with a simple classifier. We improve on the previous state-of-the-art result for AMR parsing, boosting end-to-end performance by 3 F$_1$ on both the LDC2013E117 and LDC2014T12 datasets.Comment: To appear in ACL 201

apk2vec: Semi-supervised multi-view representation learning for profiling Android applications

Building behavior profiles of Android applications (apps) with holistic, rich and multi-view information (e.g., incorporating several semantic views of an app such as API sequences, system calls, etc.) would help catering downstream analytics tasks such as app categorization, recommendation and malware analysis significantly better. Towards this goal, we design a semi-supervised Representation Learning (RL) framework named apk2vec to automatically generate a compact representation (aka profile/embedding) for a given app. More specifically, apk2vec has the three following unique characteristics which make it an excellent choice for largescale app profiling: (1) it encompasses information from multiple semantic views such as API sequences, permissions, etc., (2) being a semi-supervised embedding technique, it can make use of labels associated with apps (e.g., malware family or app category labels) to build high quality app profiles, and (3) it combines RL and feature hashing which allows it to efficiently build profiles of apps that stream over time (i.e., online learning). The resulting semi-supervised multi-view hash embeddings of apps could then be used for a wide variety of downstream tasks such as the ones mentioned above. Our extensive evaluations with more than 42,000 apps demonstrate that apk2vec's app profiles could significantly outperform state-of-the-art techniques in four app analytics tasks namely, malware detection, familial clustering, app clone detection and app recommendation.Comment: International Conference on Data Mining, 201

External Evaluation of Event Extraction Classifiers for Automatic Pathway Curation: An extended study of the mTOR pathway

This paper evaluates the impact of various event extraction systems on automatic pathway curation using the popular mTOR pathway. We quantify the impact of training data sets as well as different machine learning classifiers and show that some improve the quality of automatically extracted pathways