Experimental Design via Generalized Mean Objective Cost of Uncertainty

The mean objective cost of uncertainty (MOCU) quantifies the performance cost of using an operator that is optimal across an uncertainty class of systems as opposed to using an operator that is optimal for a particular system. MOCU-based experimental design selects an experiment to maximally reduce MOCU, thereby gaining the greatest reduction of uncertainty impacting the operational objective. The original formulation applied to finding optimal system operators, where optimality is with respect to a cost function, such as mean-square error; and the prior distribution governing the uncertainty class relates directly to the underlying physical system. Here we provide a generalized MOCU and the corresponding experimental design. We then demonstrate how this new formulation includes as special cases MOCU-based experimental design methods developed for materials science and genomic networks when there is experimental error. Most importantly, we show that the classical Knowledge Gradient and Efficient Global Optimization experimental design procedures are actually implementations of MOCU-based experimental design under their modeling assumptions

Sequential Sampling for Optimal Bayesian Classification of Sequencing Count Data

High throughput technologies have become the practice of choice for comparative studies in biomedical applications. Limited number of sample points due to sequencing cost or access to organisms of interest necessitates the development of efficient sample collections to maximize the power of downstream statistical analyses. We propose a method for sequentially choosing training samples under the Optimal Bayesian Classification framework. Specifically designed for RNA sequencing count data, the proposed method takes advantage of efficient Gibbs sampling procedure with closed-form updates. Our results shows enhanced classification accuracy, when compared to random sampling.Comment: 6 pages, 4 figures, accepted in Asilomar Conference on Signals, Systems, and Computers 201