In silico transitions to multicellularity

The emergence of multicellularity and developmental programs are among the major problems of evolutionary biology. Traditionally, research in this area has been based on the combination of data analysis and experimental work on one hand and theoretical approximations on the other. A third possibility is provided by computer simulation models, which allow to both simulate reality and explore alternative possibilities. These in silico models offer a powerful window to the possible and the actual by means of modeling how virtual cells and groups of cells can evolve complex interactions beyond a set of isolated entities. Here we present several examples of such models, each one illustrating the potential for artificial modeling of the transition to multicellularity.Comment: 21 pages, 10 figures. Book chapter of Evolutionary transitions to multicellular life (Springer

Evolved Open-Endedness in Cultural Evolution: A New Dimension in Open-Ended Evolution Research

The goal of Artificial Life research, as articulated by Chris Langton, is "to contribute to theoretical biology by locating life-as-we-know-it within the larger picture of life-as-it-could-be" (1989, p.1). The study and pursuit of open-ended evolution in artificial evolutionary systems exemplifies this goal. However, open-ended evolution research is hampered by two fundamental issues; the struggle to replicate open-endedness in an artificial evolutionary system, and the fact that we only have one system (genetic evolution) from which to draw inspiration. Here we argue that cultural evolution should be seen not only as another real-world example of an open-ended evolutionary system, but that the unique qualities seen in cultural evolution provide us with a new perspective from which we can assess the fundamental properties of, and ask new questions about, open-ended evolutionary systems, especially in regard to evolved open-endedness and transitions from bounded to unbounded evolution. Here we provide an overview of culture as an evolutionary system, highlight the interesting case of human cultural evolution as an open-ended evolutionary system, and contextualise cultural evolution under the framework of (evolved) open-ended evolution. We go on to provide a set of new questions that can be asked once we consider cultural evolution within the framework of open-ended evolution, and introduce new insights that we may be able to gain about evolved open-endedness as a result of asking these questions.Comment: 26 pages, 1 figure, 1 table, submitted to Artificial Life journal (special issue on Open-Ended Evolution

Mechanical generation of networks with surplus complexity

In previous work I examined an information based complexity measure of networks with weighted links. The measure was compared with that obtained from by randomly shuffling the original network, forming an Erdos-Renyi random network preserving the original link weight distribution. It was found that real world networks almost invariably had higher complexity than their shuffled counterparts, whereas networks mechanically generated via preferential attachment did not. The same experiment was performed on foodwebs generated by an artificial life system, Tierra, and a couple of evolutionary ecology systems, EcoLab and WebWorld. These latter systems often exhibited the same complexity excess shown by real world networks, suggesting that the complexity surplus indicates the presence of evolutionary dynamics. In this paper, I report on a mechanical network generation system that does produce this complexity surplus. The heart of the idea is to construct the network of state transitions of a chaotic dynamical system, such as the Lorenz equation. This indicates that complexity surplus is a more fundamental trait than that of being an evolutionary system.Comment: Accepted for ACALCI 2015 Newcastle, Australi

Open problems in artificial life

This article lists fourteen open problems in artificial life, each of which is a grand challenge requiring a major advance on a fundamental issue for its solution. Each problem is briefly explained, and, where deemed helpful, some promising paths to its solution are indicated

The meaning of life in a developing universe

The evolution of life on Earth has produced an organism that is beginning to model and understand its own evolution and the possible future evolution of life in the universe. These models and associated evidence show that evolution on Earth has a trajectory. The scale over which living processes are organized cooperatively has increased progressively, as has its evolvability. Recent theoretical advances raise the possibility that this trajectory is itself part of a wider developmental process. According to these theories, the developmental process has been shaped by a larger evolutionary process that involves the reproduction of universes. This evolutionary process has tuned the key parameters of the universe to increase the likelihood that life will emerge and develop to produce outcomes that are successful in the larger process (e.g. a key outcome may be to produce life and intelligence that intentionally reproduces the universe and tunes the parameters of ‘offspring’ universes). Theory suggests that when life emerges on a planet, it moves along this trajectory of its own accord. However, at a particular point evolution will continue to advance only if organisms emerge that decide to advance the evolutionary process intentionally. The organisms must be prepared to make this commitment even though the ultimate nature and destination of the process is uncertain, and may forever remain unknown. Organisms that complete this transition to intentional evolution will drive the further development of life and intelligence in the universe. Humanity’s increasing understanding of the evolution of life in the universe is rapidly bringing it to the threshold of this major evolutionary transition