`The frozen accident' as an evolutionary adaptation: A rate distortion theory perspective on the dynamics and symmetries of genetic coding mechanisms

We survey some interpretations and related issues concerning the frozen hypothesis due to F. Crick and how it can be explained in terms of several natural mechanisms involving error correction codes, spin glasses, symmetry breaking and the characteristic robustness of genetic networks. The approach to most of these questions involves using elements of Shannon's rate distortion theory incorporating a semantic system which is meaningful for the relevant alphabets and vocabulary implemented in transmission of the genetic code. We apply the fundamental homology between information source uncertainty with the free energy density of a thermodynamical system with respect to transcriptional regulators and the communication channels of sequence/structure in proteins. This leads to the suggestion that the frozen accident may have been a type of evolutionary adaptation

Layer-by-layer disentangling two-dimensional topological quantum codes

While local unitary transformations are used for identifying quantum states which are in the same topological class, non-local unitary transformations are also important for studying the transition between different topological classes. In particular, it is an important task to find suitable non-local transformations that systematically sweep different topological classes. Here, regarding the role of dimension in the topological classes, we introduce partially local unitary transformations namely Greenberger-Horne-Zeilinger (GHZ) disentanglers which reduce the dimension of the initial topological model by a layer-by-layer disentangling mechanism. We apply such disentanglers to two-dimensional (2D) topological quantum codes and show that they are converted to many copies of Kitaev's ladders. It implies that the GHZ disentangler causes a transition from an intrinsic topological phase to a symmetry-protected topological phase. Then, we show that while Kitaev's ladders are building blocks of both color code and toric code, there are different patterns of entangling ladders in 2D color code and toric code. It shows that different topological features of these topological codes are reflected in different patterns of entangling ladders. In this regard, we propose that the layer-by-layer disentangling mechanism can be used as a systematic method for classification of topological orders based on finding different patterns of the long-range entanglement in topological lattice models.Comment: 9 pages, 9 figures, submitted to PR

Structure of 2D Topological Stabilizer Codes

We provide a detailed study of the general structure of two-dimensional topological stabilizer quantum error correcting codes, including subsystem codes. Under the sole assumption of translational invariance, we show that all such codes can be understood in terms of the homology of string operators that carry a certain topological charge. In the case of subspace codes, we prove that two codes are equivalent under a suitable set of local transformations if and only they have equivalent topological charges. Our approach emphasizes local properties of the codes over global ones.Comment: 54 pages, 11 figures, version accepted in journal, improved presentation and result

Minimising surface-code failures using a color-code decoder

The development of practical, high-performance decoding algorithms reduces the resource cost of fault-tolerant quantum computing. Here we propose a decoder for the surface code that finds low-weight correction operators for errors produced by the depolarising noise model. The decoder is obtained by mapping the syndrome of the surface code onto that of the color code, thereby allowing us to adopt more sophisticated color-code decoding algorithms. Analytical arguments and exhaustive testing show that the resulting decoder can find a least-weight correction for all weight $d/2$ depolarising errors for even code distance $d$. This improves the logical error rate by an exponential factor $O(2^{d/2})$ compared with decoders that treat bit-flip and dephasing errors separately. We demonstrate this improvement with analytical arguments and supporting numerical simulations at low error rates. Of independent interest, we also demonstrate an exponential improvement in logical error rate for our decoder used to correct independent and identically distributed bit-flip errors affecting the color code compared with more conventional color-code decoding algorithms

Topological Order, Quantum Codes and Quantum Computation on Fractal Geometries

We investigate topological order on fractal geometries embedded in $n$ dimensions. In particular, we diagnose the existence of the topological order through the lens of quantum information and geometry, i.e., via its equivalence to a quantum error-correcting code with a macroscopic code distance or the presence of macroscopic systoles in systolic geometry. We first prove a no-go theorem that $\mathbb{Z}_N$ topological order cannot survive on any fractal embedded in 2D. For fractal lattice models embedded in 3D or higher spatial dimensions, $\mathbb{Z}_N$ topological order survives if the boundaries of the interior holes condense only loop or membrane excitations. Moreover, for a class of models containing only loop or membrane excitations, and are hence self-correcting on an $n$-dimensional manifold, we prove that topological order survives on a large class of fractal geometries independent of the type of hole boundaries. We further construct fault-tolerant logical gates using their connection to global and higher-form topological symmetries. In particular, we have discovered a logical CCZ gate corresponding to a global symmetry in a class of fractal codes embedded in 3D with Hausdorff dimension asymptotically approaching $D_H=2+\epsilon$ for arbitrarily small $\epsilon$, which hence only requires a space-overhead $\Omega(d^{2+\epsilon})$ with $d$ being the code distance. This in turn leads to the surprising discovery of certain exotic gapped boundaries that only condense the combination of loop excitations and gapped domain walls. We further obtain logical $\text{C}^{p}\text{Z}$ gates with $p\le n-1$ on fractal codes embedded in $n$D. In particular, for the logical $\text{C}^{n-1}\text{Z}$ in the $n^\text{th}$ level of Clifford hierarchy, we can reduce the space overhead to $\Omega(d^{n-1+\epsilon})$. Mathematically, our findings correspond to macroscopic relative systoles in fractals.Comment: 46+10 pages, fixed typos and the table content, updated funding informatio