Ensemble similarity measures for clustering terms

Clustering semantically related terms is crucial for many applications such as document categorization, and word sense disambiguation. However, automatically identifying semantically similar terms is challenging. We present a novel approach for automatically determining the degree of relatedness between terms to facilitate their subsequent clustering. Using the analogy of ensemble classifiers in Machine Learning, we combine multiple techniques like contextual similarity and semantic relatedness to boost the accuracy of our computations. A new method, based on Yarowsky's [9] word sense disambiguation approach, to generate high-quality topic signatures for contextual similarity computations, is presented. A technique to measure semantic relatedness between multi-word terms, based on the work of Hirst and St. Onge [2] is also proposed. Experimental evaluation reveals that our method outperforms similar related works. We also investigate the effects of assigning different importance levels to the different similarity measures based on the corpus characteristics.</p

Microbial community pattern detection in human body habitats via ensemble clustering framework

The human habitat is a host where microbial species evolve, function, and continue to evolve. Elucidating how microbial communities respond to human habitats is a fundamental and critical task, as establishing baselines of human microbiome is essential in understanding its role in human disease and health. However, current studies usually overlook a complex and interconnected landscape of human microbiome and limit the ability in particular body habitats with learning models of specific criterion. Therefore, these methods could not capture the real-world underlying microbial patterns effectively. To obtain a comprehensive view, we propose a novel ensemble clustering framework to mine the structure of microbial community pattern on large-scale metagenomic data. Particularly, we first build a microbial similarity network via integrating 1920 metagenomic samples from three body habitats of healthy adults. Then a novel symmetric Nonnegative Matrix Factorization (NMF) based ensemble model is proposed and applied onto the network to detect clustering pattern. Extensive experiments are conducted to evaluate the effectiveness of our model on deriving microbial community with respect to body habitat and host gender. From clustering results, we observed that body habitat exhibits a strong bound but non-unique microbial structural patterns. Meanwhile, human microbiome reveals different degree of structural variations over body habitat and host gender. In summary, our ensemble clustering framework could efficiently explore integrated clustering results to accurately identify microbial communities, and provide a comprehensive view for a set of microbial communities. Such trends depict an integrated biography of microbial communities, which offer a new insight towards uncovering pathogenic model of human microbiome.Comment: BMC Systems Biology 201

Coupled clustering ensemble by exploring data interdependence

© 2018 ACM. Clustering ensembles combine multiple partitions of data into a single clustering solution. It is an effective technique for improving the quality of clustering results. Current clustering ensemble algorithms are usually built on the pairwise agreements between clusterings that focus on the similarity via consensus functions, between data objects that induce similarity measures from partitions and re-cluster objects, and between clusters that collapse groups of clusters into meta-clusters. In most of those models, there is a strong assumption on IIDness (i.e., independent and identical distribution), which states that base clusterings perform independently of one another and all objects are also independent. In the real world, however, objects are generally likely related to each other through features that are either explicit or even implicit. There is also latent but definite relationship among intermediate base clusterings because they are derived from the same set of data. All these demand a further investigation of clustering ensembles that explores the interdependence characteristics of data. To solve this problem, a new coupled clustering ensemble (CCE) framework that works on the interdependence nature of objects and intermediate base clusterings is proposed in this article. The main idea is to model the coupling relationship between objects by aggregating the similarity of base clusterings, and the interactive relationship among objects by addressing their neighborhood domains. Once these interdependence relationships are discovered, they will act as critical supplements to clustering ensembles. We verified our proposed framework by using three types of consensus function: clustering-based, object-based, and cluster-based. Substantial experiments on multiple synthetic and real-life benchmark datasets indicate that CCE can effectively capture the implicit interdependence relationships among base clusterings and among objects with higher clustering accuracy, stability, and robustness compared to 14 state-of-the-art techniques, supported by statistical analysis. In addition, we show that the final clustering quality is dependent on the data characteristics (e.g., quality and consistency) of base clusterings in terms of sensitivity analysis. Finally, the applications in document clustering, as well as on the datasets with much larger size and dimensionality, further demonstrate the effectiveness, efficiency, and scalability of our proposed models

Time Series Cluster Kernel for Learning Similarities between Multivariate Time Series with Missing Data

Similarity-based approaches represent a promising direction for time series analysis. However, many such methods rely on parameter tuning, and some have shortcomings if the time series are multivariate (MTS), due to dependencies between attributes, or the time series contain missing data. In this paper, we address these challenges within the powerful context of kernel methods by proposing the robust \emph{time series cluster kernel} (TCK). The approach taken leverages the missing data handling properties of Gaussian mixture models (GMM) augmented with informative prior distributions. An ensemble learning approach is exploited to ensure robustness to parameters by combining the clustering results of many GMM to form the final kernel. We evaluate the TCK on synthetic and real data and compare to other state-of-the-art techniques. The experimental results demonstrate that the TCK is robust to parameter choices, provides competitive results for MTS without missing data and outstanding results for missing data.Comment: 23 pages, 6 figure

Combining Multiple Clusterings via Crowd Agreement Estimation and Multi-Granularity Link Analysis

The clustering ensemble technique aims to combine multiple clusterings into a probably better and more robust clustering and has been receiving an increasing attention in recent years. There are mainly two aspects of limitations in the existing clustering ensemble approaches. Firstly, many approaches lack the ability to weight the base clusterings without access to the original data and can be affected significantly by the low-quality, or even ill clusterings. Secondly, they generally focus on the instance level or cluster level in the ensemble system and fail to integrate multi-granularity cues into a unified model. To address these two limitations, this paper proposes to solve the clustering ensemble problem via crowd agreement estimation and multi-granularity link analysis. We present the normalized crowd agreement index (NCAI) to evaluate the quality of base clusterings in an unsupervised manner and thus weight the base clusterings in accordance with their clustering validity. To explore the relationship between clusters, the source aware connected triple (SACT) similarity is introduced with regard to their common neighbors and the source reliability. Based on NCAI and multi-granularity information collected among base clusterings, clusters, and data instances, we further propose two novel consensus functions, termed weighted evidence accumulation clustering (WEAC) and graph partitioning with multi-granularity link analysis (GP-MGLA) respectively. The experiments are conducted on eight real-world datasets. The experimental results demonstrate the effectiveness and robustness of the proposed methods.Comment: The MATLAB source code of this work is available at: https://www.researchgate.net/publication/28197031

The multiplex structure of interbank networks

The interbank market has a natural multiplex network representation. We employ a unique database of supervisory reports of Italian banks to the Banca d'Italia that includes all bilateral exposures broken down by maturity and by the secured and unsecured nature of the contract. We find that layers have different topological properties and persistence over time. The presence of a link in a layer is not a good predictor of the presence of the same link in other layers. Maximum entropy models reveal different unexpected substructures, such as network motifs, in different layers. Using the total interbank network or focusing on a specific layer as representative of the other layers provides a poor representation of interlinkages in the interbank market and could lead to biased estimation of systemic risk.Comment: 41 pages, 8 figures, 10 table

NEXT LEVEL: A COURSE RECOMMENDER SYSTEM BASED ON CAREER INTERESTS

Skills-based hiring is a talent management approach that empowers employers to align recruitment around business results, rather than around credentials and title. It starts with employers identifying the particular skills required for a role, and then screening and evaluating candidates’ competencies against those requirements. With the recent rise in employers adopting skills-based hiring practices, it has become integral for students to take courses that improve their marketability and support their long-term career success. A 2017 survey of over 32,000 students at 43 randomly selected institutions found that only 34% of students believe they will graduate with the skills and knowledge required to be successful in the job market. Furthermore, the study found that while 96% of chief academic officers believe that their institutions are very or somewhat effective at preparing students for the workforce, only 11% of business leaders strongly agree [11]. An implication of the misalignment is that college graduates lack the skills that companies need and value. Fortunately, the rise of skills-based hiring provides an opportunity for universities and students to establish and follow clearer classroom-to-career pathways. To this end, this paper presents a course recommender system that aims to improve students’ career readiness by suggesting relevant skills and courses based on their unique career interests