3,874 research outputs found
PT-Scotch: A tool for efficient parallel graph ordering
The parallel ordering of large graphs is a difficult problem, because on the
one hand minimum degree algorithms do not parallelize well, and on the other
hand the obtainment of high quality orderings with the nested dissection
algorithm requires efficient graph bipartitioning heuristics, the best
sequential implementations of which are also hard to parallelize. This paper
presents a set of algorithms, implemented in the PT-Scotch software package,
which allows one to order large graphs in parallel, yielding orderings the
quality of which is only slightly worse than the one of state-of-the-art
sequential algorithms. Our implementation uses the classical nested dissection
approach but relies on several novel features to solve the parallel graph
bipartitioning problem. Thanks to these improvements, PT-Scotch produces
consistently better orderings than ParMeTiS on large numbers of processors
Aggregation-based aggressive coarsening with polynomial smoothing
This paper develops an algebraic multigrid preconditioner for the graph
Laplacian. The proposed approach uses aggressive coarsening based on the
aggregation framework in the setup phase and a polynomial smoother with
sufficiently large degree within a (nonlinear) Algebraic Multilevel Iteration
as a preconditioner to the flexible Conjugate Gradient iteration in the solve
phase. We show that by combining these techniques it is possible to design a
simple and scalable algorithm. Results of the algorithm applied to graph
Laplacian systems arising from the standard linear finite element
discretization of the scalar Poisson problem are reported
Advanced Multilevel Node Separator Algorithms
A node separator of a graph is a subset S of the nodes such that removing S
and its incident edges divides the graph into two disconnected components of
about equal size. In this work, we introduce novel algorithms to find small
node separators in large graphs. With focus on solution quality, we introduce
novel flow-based local search algorithms which are integrated in a multilevel
framework. In addition, we transfer techniques successfully used in the graph
partitioning field. This includes the usage of edge ratings tailored to our
problem to guide the graph coarsening algorithm as well as highly localized
local search and iterated multilevel cycles to improve solution quality even
further. Experiments indicate that flow-based local search algorithms on its
own in a multilevel framework are already highly competitive in terms of
separator quality. Adding additional local search algorithms further improves
solution quality. Our strongest configuration almost always outperforms
competing systems while on average computing 10% and 62% smaller separators
than Metis and Scotch, respectively
Efficient Subgraph Matching on Billion Node Graphs
The ability to handle large scale graph data is crucial to an increasing
number of applications. Much work has been dedicated to supporting basic graph
operations such as subgraph matching, reachability, regular expression
matching, etc. In many cases, graph indices are employed to speed up query
processing. Typically, most indices require either super-linear indexing time
or super-linear indexing space. Unfortunately, for very large graphs,
super-linear approaches are almost always infeasible. In this paper, we study
the problem of subgraph matching on billion-node graphs. We present a novel
algorithm that supports efficient subgraph matching for graphs deployed on a
distributed memory store. Instead of relying on super-linear indices, we use
efficient graph exploration and massive parallel computing for query
processing. Our experimental results demonstrate the feasibility of performing
subgraph matching on web-scale graph data.Comment: VLDB201
Parallel Graph Partitioning for Complex Networks
Processing large complex networks like social networks or web graphs has
recently attracted considerable interest. In order to do this in parallel, we
need to partition them into pieces of about equal size. Unfortunately, previous
parallel graph partitioners originally developed for more regular mesh-like
networks do not work well for these networks. This paper addresses this problem
by parallelizing and adapting the label propagation technique originally
developed for graph clustering. By introducing size constraints, label
propagation becomes applicable for both the coarsening and the refinement phase
of multilevel graph partitioning. We obtain very high quality by applying a
highly parallel evolutionary algorithm to the coarsened graph. The resulting
system is both more scalable and achieves higher quality than state-of-the-art
systems like ParMetis or PT-Scotch. For large complex networks the performance
differences are very big. For example, our algorithm can partition a web graph
with 3.3 billion edges in less than sixteen seconds using 512 cores of a high
performance cluster while producing a high quality partition -- none of the
competing systems can handle this graph on our system.Comment: Review article. Parallelization of our previous approach
arXiv:1402.328
- …