1 research outputs found
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection
Detecting and segmenting individual cells from microscopy images is critical
to various life science applications. Traditional cell segmentation tools are
often ill-suited for applications in brightfield microscopy due to poor
contrast and intensity heterogeneity, and only a small subset are applicable to
segment cells in a cluster. In this regard, we introduce a novel supervised
technique for cell segmentation in a multi-task learning paradigm. A
combination of a multi-task loss, based on the region and cell boundary
detection, is employed for an improved prediction efficiency of the network.
The learning problem is posed in a novel min-max framework which enables
adaptive estimation of the hyper-parameters in an automatic fashion. The region
and cell boundary predictions are combined via morphological operations and
active contour model to segment individual cells.
The proposed methodology is particularly suited to segment touching cells
from brightfield microscopy images without manual interventions.
Quantitatively, we observe an overall Dice score of 0.93 on the validation set,
which is an improvement of over 15.9% on a recent unsupervised method, and
outperforms the popular supervised U-net algorithm by at least on
average