Dynamics and Performance of Susceptibility Propagation on Synthetic Data

We study the performance and convergence properties of the Susceptibility Propagation (SusP) algorithm for solving the Inverse Ising problem. We first study how the temperature parameter (T) in a Sherrington-Kirkpatrick model generating the data influences the performance and convergence of the algorithm. We find that at the high temperature regime (T>4), the algorithm performs well and its quality is only limited by the quality of the supplied data. In the low temperature regime (T<4), we find that the algorithm typically does not converge, yielding diverging values for the couplings. However, we show that by stopping the algorithm at the right time before divergence becomes serious, good reconstruction can be achieved down to T~2. We then show that dense connectivity, loopiness of the connectivity, and high absolute magnetization all have deteriorating effects on the performance of the algorithm. When absolute magnetization is high, we show that other methods can be work better than SusP. Finally, we show that for neural data with high absolute magnetization, SusP performs less well than TAP inversion.Comment: 9 pages, 7 figure

Catalyst Acceleration for First-order Convex Optimization: from Theory to Practice

We introduce a generic scheme for accelerating gradient-based optimization methods in the sense of Nesterov. The approach, called Catalyst, builds upon the inexact accelerated proximal point algorithm for minimizing a convex objective function, and consists of approximately solving a sequence of well-chosen auxiliary problems, leading to faster convergence. One of the keys to achieve acceleration in theory and in practice is to solve these sub-problems with appropriate accuracy by using the right stopping criterion and the right warm-start strategy. We give practical guidelines to use Catalyst and present a comprehensive analysis of its global complexity. We show that Catalyst applies to a large class of algorithms, including gradient descent, block coordinate descent, incremental algorithms such as SAG, SAGA, SDCA, SVRG, MISO/Finito, and their proximal variants. For all of these methods, we establish faster rates using the Catalyst acceleration, for strongly convex and non-strongly convex objectives. We conclude with extensive experiments showing that acceleration is useful in practice, especially for ill-conditioned problems.Comment: link to publisher website: http://jmlr.org/papers/volume18/17-748/17-748.pd