A General Upper Bound on the Size of Constant-Weight Conflict-Avoiding Codes

Conflict-avoiding codes are used in the multiple-access collision channel without feedback. The number of codewords in a conflict-avoiding code is the number of potential users that can be supported in the system. In this paper, a new upper bound on the size of conflict-avoiding codes is proved. This upper bound is general in the sense that it is applicable to all code lengths and all Hamming weights. Several existing constructions for conflict-avoiding codes, which are known to be optimal for Hamming weights equal to four and five, are shown to be optimal for all Hamming weights in general.Comment: 10 pages, 1 figur

Construction and Applications of CRT Sequences

Protocol sequences are used for channel access in the collision channel without feedback. Each user accesses the channel according to a deterministic zero-one pattern, called the protocol sequence. In order to minimize fluctuation of throughput due to delay offsets, we want to construct protocol sequences whose pairwise Hamming cross-correlation is as close to a constant as possible. In this paper, we present a construction of protocol sequences which is based on the bijective mapping between one-dimensional sequence and two-dimensional array by the Chinese Remainder Theorem (CRT). In the application to the collision channel without feedback, a worst-case lower bound on system throughput is derived.Comment: 16 pages, 5 figures. Some typos in Section V are correcte

Mutually Uncorrelated Primers for DNA-Based Data Storage

We introduce the notion of weakly mutually uncorrelated (WMU) sequences, motivated by applications in DNA-based data storage systems and for synchronization of communication devices. WMU sequences are characterized by the property that no sufficiently long suffix of one sequence is the prefix of the same or another sequence. WMU sequences used for primer design in DNA-based data storage systems are also required to be at large mutual Hamming distance from each other, have balanced compositions of symbols, and avoid primer-dimer byproducts. We derive bounds on the size of WMU and various constrained WMU codes and present a number of constructions for balanced, error-correcting, primer-dimer free WMU codes using Dyck paths, prefix-synchronized and cyclic codes.Comment: 14 pages, 3 figures, 1 Table. arXiv admin note: text overlap with arXiv:1601.0817