Skew cyclic codes over Z4+vZ4\mathbb{Z}_4+v\mathbb{Z}_4 with derivation: structural properties and computational results

In this work, we study a class of skew cyclic codes over the ring $R:=\mathbb{Z}_4+v\mathbb{Z}_4,$ where $v^2=v,$ with an automorphism $\theta$ and a derivation $\Delta_\theta,$ namely codes as modules over a skew polynomial ring $R[x;\theta,\Delta_{\theta}],$ whose multiplication is defined using an automorphism $\theta$ and a derivation $\Delta_{\theta}.$ We investigate the structures of a skew polynomial ring $R[x;\theta,\Delta_{\theta}].$ We define $\Delta_{\theta}$-cyclic codes as a generalization of the notion of cyclic codes. The properties of $\Delta_{\theta}$-cyclic codes as well as dual $\Delta_{\theta}$-cyclic codes are derived. As an application, some new linear codes over $\mathbb{Z}_4$ with good parameters are obtained by Plotkin sum construction, also via a Gray map as well as residue and torsion codes of these codes.Comment: 25 page

On DNA Codes Over the Non-Chain Ring Z4+uZ4+u2Z4\mathbb{Z}_4+u\mathbb{Z}_4+u^2\mathbb{Z}_4 with u3=1u^3=1

In this paper, we present a novel design strategy of DNA codes with length $3n$ over the non-chain ring $R=\mathbb{Z}_4+u\mathbb{Z}_4+u^2\mathbb{Z}_4$ with $64$ elements and $u^3=1$, where $n$ denotes the length of a code over $R$. We first study and analyze a distance conserving map defined over the ring $R$ into the length-$3$ DNA sequences. Then, we derive some conditions on the generator matrix of a linear code over $R$, which leads to a DNA code with reversible, reversible-complement, homopolymer $2$-run-length, and $\frac{w}{3n}$-GC-content constraints for integer $w$ ($0\leq w\leq 3n$). Finally, we propose a new construction of DNA codes using Reed-Muller type generator matrices. This allows us to obtain DNA codes with reversible, reversible-complement, homopolymer $2$-run-length, and $\frac{2}{3}$-GC-content constraints.Comment: This paper has been presented in IEEE Information Theory Workshop (ITW) 2022, Mumbai, INDI

Reversible DNA codes from skew cyclic codes over a ring of order 256

We introduce skew cyclic codes over the finite ring $\R$, where $u^{2}=0,v^{2}=v,w^{2}=w,uv=vu,uw=wu,vw=wv$ and use them to construct reversible DNA codes. The 4-mers are matched with the elements of this ring. The reversibility problem for DNA 4-bases is solved and some examples are provided

Kernel Code for DNA Digital Data Storage

The biggest challenge when using DNA as a storage medium is maintaining its stability. The relative occurrence of Guanine (G) and Cytosine (C) is essential for the longevity of DNA. In addition to that, reverse complementary base pairs should not be present in the code. These challenges are overcome by a proper choice of group homomorphisms. Algorithms for storage and retrieval of information in DNA stings are written by using kernel code. Complexities of these algorithms are less compared to the existing algorithms. Construction procedures followed in this paper are capable of constructing codes of required sizes and Reverse complement distance.Comment: 12 pages, 1 figur