An Integration-Oriented Ontology to Govern Evolution in Big Data Ecosystems

Big Data architectures allow to flexibly store and process heterogeneous data, from multiple sources, in their original format. The structure of those data, commonly supplied by means of REST APIs, is continuously evolving. Thus data analysts need to adapt their analytical processes after each API release. This gets more challenging when performing an integrated or historical analysis. To cope with such complexity, in this paper, we present the Big Data Integration ontology, the core construct to govern the data integration process under schema evolution by systematically annotating it with information regarding the schema of the sources. We present a query rewriting algorithm that, using the annotated ontology, converts queries posed over the ontology to queries over the sources. To cope with syntactic evolution in the sources, we present an algorithm that semi-automatically adapts the ontology upon new releases. This guarantees ontology-mediated queries to correctly retrieve data from the most recent schema version as well as correctness in historical queries. A functional and performance evaluation on real-world APIs is performed to validate our approach.Comment: Preprint submitted to Information Systems. 35 page

An integration-oriented ontology to govern evolution in big data ecosystems

Big Data architectures allow to flexibly store and process heterogeneous data, from multiple sources, in their original format. The structure of those data, commonly supplied by means of REST APIs, is continuously evolving. Thus data analysts need to adapt their analytical processes after each API release. This gets more challenging when performing an integrated or historical analysis. To cope with such complexity, in this paper, we present the Big Data Integration ontology, the core construct to govern the data integration process under schema evolution by systematically annotating it with information regarding the schema of the sources. We present a query rewriting algorithm that, using the annotated ontology, converts queries posed over the ontology to queries over the sources. To cope with syntactic evolution in the sources, we present an algorithm that semi-automatically adapts the ontology upon new releases. This guarantees ontology-mediated queries to correctly retrieve data from the most recent schema version as well as correctness in historical queries. A functional and performance evaluation on real-world APIs is performed to validate our approach.Peer ReviewedPostprint (author's final draft

Metadata-driven data integration

Cotutela: Universitat Politècnica de Catalunya i Université Libre de Bruxelles, IT4BI-DC programme for the joint Ph.D. degree in computer science.Data has an undoubtable impact on society. Storing and processing large amounts of available data is currently one of the key success factors for an organization. Nonetheless, we are recently witnessing a change represented by huge and heterogeneous amounts of data. Indeed, 90% of the data in the world has been generated in the last two years. Thus, in order to carry on these data exploitation tasks, organizations must first perform data integration combining data from multiple sources to yield a unified view over them. Yet, the integration of massive and heterogeneous amounts of data requires revisiting the traditional integration assumptions to cope with the new requirements posed by such data-intensive settings. This PhD thesis aims to provide a novel framework for data integration in the context of data-intensive ecosystems, which entails dealing with vast amounts of heterogeneous data, from multiple sources and in their original format. To this end, we advocate for an integration process consisting of sequential activities governed by a semantic layer, implemented via a shared repository of metadata. From an stewardship perspective, this activities are the deployment of a data integration architecture, followed by the population of such shared metadata. From a data consumption perspective, the activities are virtual and materialized data integration, the former an exploratory task and the latter a consolidation one. Following the proposed framework, we focus on providing contributions to each of the four activities. We begin proposing a software reference architecture for semantic-aware data-intensive systems. Such architecture serves as a blueprint to deploy a stack of systems, its core being the metadata repository. Next, we propose a graph-based metadata model as formalism for metadata management. We focus on supporting schema and data source evolution, a predominant factor on the heterogeneous sources at hand. For virtual integration, we propose query rewriting algorithms that rely on the previously proposed metadata model. We additionally consider semantic heterogeneities in the data sources, which the proposed algorithms are capable of automatically resolving. Finally, the thesis focuses on the materialized integration activity, and to this end, proposes a method to select intermediate results to materialize in data-intensive flows. Overall, the results of this thesis serve as contribution to the field of data integration in contemporary data-intensive ecosystems.Les dades tenen un impacte indubtable en la societat. La capacitat d’emmagatzemar i processar grans quantitats de dades disponibles és avui en dia un dels factors claus per l’èxit d’una organització. No obstant, avui en dia estem presenciant un canvi representat per grans volums de dades heterogenis. En efecte, el 90% de les dades mundials han sigut generades en els últims dos anys. Per tal de dur a terme aquestes tasques d’explotació de dades, les organitzacions primer han de realitzar una integració de les dades, combinantles a partir de diferents fonts amb l’objectiu de tenir-ne una vista unificada d’elles. Per això, aquest fet requereix reconsiderar les assumpcions tradicionals en integració amb l’objectiu de lidiar amb els requisits imposats per aquests sistemes de tractament massiu de dades. Aquesta tesi doctoral té com a objectiu proporcional un nou marc de treball per a la integració de dades en el context de sistemes de tractament massiu de dades, el qual implica lidiar amb una gran quantitat de dades heterogènies, provinents de múltiples fonts i en el seu format original. Per això, proposem un procés d’integració compost d’una seqüència d’activitats governades per una capa semàntica, la qual és implementada a partir d’un repositori de metadades compartides. Des d’una perspectiva d’administració, aquestes activitats són el desplegament d’una arquitectura d’integració de dades, seguit per la inserció d’aquestes metadades compartides. Des d’una perspectiva de consum de dades, les activitats són la integració virtual i materialització de les dades, la primera sent una tasca exploratòria i la segona una de consolidació. Seguint el marc de treball proposat, ens centrem en proporcionar contribucions a cada una de les quatre activitats. La tesi inicia proposant una arquitectura de referència de software per a sistemes de tractament massiu de dades amb coneixement semàntic. Aquesta arquitectura serveix com a planell per a desplegar un conjunt de sistemes, sent el repositori de metadades al seu nucli. Posteriorment, proposem un model basat en grafs per a la gestió de metadades. Concretament, ens centrem en donar suport a l’evolució d’esquemes i fonts de dades, un dels factors predominants en les fonts de dades heterogènies considerades. Per a l’integració virtual, proposem algorismes de rescriptura de consultes que usen el model de metadades previament proposat. Com a afegitó, considerem heterogeneïtat semàntica en les fonts de dades, les quals els algorismes de rescriptura poden resoldre automàticament. Finalment, la tesi es centra en l’activitat d’integració materialitzada. Per això proposa un mètode per a seleccionar els resultats intermedis a materialitzar un fluxes de tractament intensiu de dades. En general, els resultats d’aquesta tesi serveixen com a contribució al camp d’integració de dades en els ecosistemes de tractament massiu de dades contemporanisLes données ont un impact indéniable sur la société. Le stockage et le traitement de grandes quantités de données disponibles constituent actuellement l’un des facteurs clés de succès d’une entreprise. Néanmoins, nous assistons récemment à un changement représenté par des quantités de données massives et hétérogènes. En effet, 90% des données dans le monde ont été générées au cours des deux dernières années. Ainsi, pour mener à bien ces tâches d’exploitation des données, les organisations doivent d’abord réaliser une intégration des données en combinant des données provenant de sources multiples pour obtenir une vue unifiée de ces dernières. Cependant, l’intégration de quantités de données massives et hétérogènes nécessite de revoir les hypothèses d’intégration traditionnelles afin de faire face aux nouvelles exigences posées par les systèmes de gestion de données massives. Cette thèse de doctorat a pour objectif de fournir un nouveau cadre pour l’intégration de données dans le contexte d’écosystèmes à forte intensité de données, ce qui implique de traiter de grandes quantités de données hétérogènes, provenant de sources multiples et dans leur format d’origine. À cette fin, nous préconisons un processus d’intégration constitué d’activités séquentielles régies par une couche sémantique, mise en oeuvre via un dépôt partagé de métadonnées. Du point de vue de la gestion, ces activités consistent à déployer une architecture d’intégration de données, suivies de la population de métadonnées partagées. Du point de vue de la consommation de données, les activités sont l’intégration de données virtuelle et matérialisée, la première étant une tâche exploratoire et la seconde, une tâche de consolidation. Conformément au cadre proposé, nous nous attachons à fournir des contributions à chacune des quatre activités. Nous commençons par proposer une architecture logicielle de référence pour les systèmes de gestion de données massives et à connaissance sémantique. Une telle architecture consiste en un schéma directeur pour le déploiement d’une pile de systèmes, le dépôt de métadonnées étant son composant principal. Ensuite, nous proposons un modèle de métadonnées basé sur des graphes comme formalisme pour la gestion des métadonnées. Nous mettons l’accent sur la prise en charge de l’évolution des schémas et des sources de données, facteur prédominant des sources hétérogènes sous-jacentes. Pour l’intégration virtuelle, nous proposons des algorithmes de réécriture de requêtes qui s’appuient sur le modèle de métadonnées proposé précédemment. Nous considérons en outre les hétérogénéités sémantiques dans les sources de données, que les algorithmes proposés sont capables de résoudre automatiquement. Enfin, la thèse se concentre sur l’activité d’intégration matérialisée et propose à cette fin une méthode de sélection de résultats intermédiaires à matérialiser dans des flux des données massives. Dans l’ensemble, les résultats de cette thèse constituent une contribution au domaine de l’intégration des données dans les écosystèmes contemporains de gestion de données massivesPostprint (published version

A schema-based peer-to-peer infrastructure for digital library networks

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Dealing with Inconsistency and Incompleteness in Data Integration

Marco Schaerf, Giuseppe Di Battista, Domenico SaccÃ

Functional inferences over heterogeneous data

Inference enables an agent to create new knowledge from old or discover implicit relationships between concepts in a knowledge base (KB), provided that appropriate techniques are employed to deal with ambiguous, incomplete and sometimes erroneous data. The ever-increasing volumes of KBs on the web, available for use by automated systems, present an opportunity to leverage the available knowledge in order to improve the inference process in automated query answering systems. This thesis focuses on the FRANK (Functional Reasoning for Acquiring Novel Knowledge) framework that responds to queries where no suitable answer is readily contained in any available data source, using a variety of inference operations. Most question answering and information retrieval systems assume that answers to queries are stored in some form in the KB, thereby limiting the range of answers they can find. We take an approach motivated by rich forms of inference using techniques, such as regression, for prediction. For instance, FRANK can answer “what country in Europe will have the largest population in 2021?" by decomposing Europe geo-spatially, using regression on country population for past years and selecting the country with the largest predicted value. Our technique, which we refer to as Rich Inference, combines heuristics, logic and statistical methods to infer novel answers to queries. It also determines what facts are needed for inference, searches for them, and then integrates the diverse facts and their formalisms into a local query-specific inference tree. Our primary contribution in this thesis is the inference algorithm on which FRANK works. This includes (1) the process of recursively decomposing queries in way that allows variables in the query to be instantiated by facts in KBs; (2) the use of aggregate functions to perform arithmetic and statistical operations (e.g. prediction) to infer new values from child nodes; and (3) the estimation and propagation of uncertainty values into the returned answer based on errors introduced by noise in the KBs or errors introduced by aggregate functions. We also discuss many of the core concepts and modules that constitute FRANK. We explain the internal “alist” representation of FRANK that gives it the required flexibility to tackle different kinds of problems with minimal changes to its internal representation. We discuss the grammar for a simple query language that allows users to express queries in a formal way, such that we avoid the complexities of natural language queries, a problem that falls outside the scope of this thesis. We evaluate the framework with datasets from open sources

Just-in-time Analytics Over Heterogeneous Data and Hardware

Industry and academia are continuously becoming more data-driven and data-intensive, relying on the analysis of a wide variety of datasets to gain insights. At the same time, data variety increases continuously across multiple axes. First, data comes in multiple formats, such as the binary tabular data of a DBMS, raw textual files, and domain-specific formats. Second, different datasets follow different data models, such as the relational and the hierarchical one. Data location also varies: Some datasets reside in a central "data lake", whereas others lie in remote data sources. In addition, users execute widely different analysis tasks over all these data types. Finally, the process of gathering and integrating diverse datasets introduces several inconsistencies and redundancies in the data, such as duplicate entries for the same real-world concept. In summary, heterogeneity significantly affects the way data analysis is performed. In this thesis, we aim for data virtualization: Abstracting data out of its original form and manipulating it regardless of the way it is stored or structured, without a performance penalty. To achieve data virtualization, we design and implement systems that i) mask heterogeneity through the use of heterogeneity-aware, high-level building blocks and ii) offer fast responses through on-demand adaptation techniques. Regarding the high-level building blocks, we use a query language and algebra to handle multiple collection types, such as relations and hierarchies, express transformations between these collection types, as well as express complex data cleaning tasks over them. In addition, we design a location-aware compiler and optimizer that masks away the complexity of accessing multiple remote data sources. Regarding on-demand adaptation, we present a design to produce a new system per query. The design uses customization mechanisms that trigger runtime code generation to mimic the system most appropriate to answer a query fast: Query operators are thus created based on the query workload and the underlying data models; the data access layer is created based on the underlying data formats. In addition, we exploit emerging hardware by customizing the system implementation based on the available heterogeneous processors â CPUs and GPGPUs. We thus pair each workload with its ideal processor type. The end result is a just-in-time database system that is specific to the query, data, workload, and hardware instance. This thesis redesigns the data management stack to natively cater for data heterogeneity and exploit hardware heterogeneity. Instead of centralizing all relevant datasets, converting them to a single representation, and loading them in a monolithic, static, suboptimal system, our design embraces heterogeneity. Overall, our design decouples the type of performed analysis from the original data layout; users can perform their analysis across data stores, data models, and data formats, but at the same time experience the performance offered by a custom system that has been built on demand to serve their specific use case