DeepBrain: Functional Representation of Neural In-Situ Hybridization Images for Gene Ontology Classification Using Deep Convolutional Autoencoders

This paper presents a novel deep learning-based method for learning a functional representation of mammalian neural images. The method uses a deep convolutional denoising autoencoder (CDAE) for generating an invariant, compact representation of in situ hybridization (ISH) images. While most existing methods for bio-imaging analysis were not developed to handle images with highly complex anatomical structures, the results presented in this paper show that functional representation extracted by CDAE can help learn features of functional gene ontology categories for their classification in a highly accurate manner. Using this CDAE representation, our method outperforms the previous state-of-the-art classification rate, by improving the average AUC from 0.92 to 0.98, i.e., achieving 75% reduction in error. The method operates on input images that were downsampled significantly with respect to the original ones to make it computationally feasible

Fast Video Classification via Adaptive Cascading of Deep Models

Recent advances have enabled "oracle" classifiers that can classify across many classes and input distributions with high accuracy without retraining. However, these classifiers are relatively heavyweight, so that applying them to classify video is costly. We show that day-to-day video exhibits highly skewed class distributions over the short term, and that these distributions can be classified by much simpler models. We formulate the problem of detecting the short-term skews online and exploiting models based on it as a new sequential decision making problem dubbed the Online Bandit Problem, and present a new algorithm to solve it. When applied to recognizing faces in TV shows and movies, we realize end-to-end classification speedups of 2.4-7.8x/2.6-11.2x (on GPU/CPU) relative to a state-of-the-art convolutional neural network, at competitive accuracy.Comment: Accepted at IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 201