A compact statistical model of the song syntax in Bengalese finch

Songs of many songbird species consist of variable sequences of a finite number of syllables. A common approach for characterizing the syntax of these complex syllable sequences is to use transition probabilities between the syllables. This is equivalent to the Markov model, in which each syllable is associated with one state, and the transition probabilities between the states do not depend on the state transition history. Here we analyze the song syntax in a Bengalese finch. We show that the Markov model fails to capture the statistical properties of the syllable sequences. Instead, a state transition model that accurately describes the statistics of the syllable sequences includes adaptation of the self-transition probabilities when states are repeatedly revisited, and allows associations of more than one state to the same syllable. Such a model does not increase the model complexity significantly. Mathematically, the model is a partially observable Markov model with adaptation (POMMA). The success of the POMMA supports the branching chain network hypothesis of how syntax is controlled within the premotor song nucleus HVC, and suggests that adaptation and many-to-one mapping from neural substrates to syllables are important features of the neural control of complex song syntax

An X-Ray Induced Structural Transition in La_0.875Sr_0.125MnO_3

We report a synchrotron x-ray scattering study of the magnetoresistive manganite La_0.875Sr_0.125MnO_3. At low temperatures, this material undergoes an x-ray induced structural transition at which charge ordering of Mn^3+ and Mn^4+ ions characteristic to the low-temperature state of this compound is destroyed. The transition is persistent but the charge-ordered state can be restored by heating above the charge-ordering transition temperature and subsequently cooling. The charge-ordering diffraction peaks, which are broadened at all temperatures, broaden more upon x-ray irradiation, indicating the finite correlation length of the charge-ordered state. Together with the recent reports on x-ray induced transitions in Pr_(1-x)Ca_xMnO_3, our results demonstrate that the photoinduced structural change is a common property of the charge-ordered perovskite manganites.Comment: 5 pages, 4 embedded EPS figures; significant changes in the data analysis mad

State Transition Algorithm

In terms of the concepts of state and state transition, a new heuristic random search algorithm named state transition algorithm is proposed. For continuous function optimization problems, four special transformation operators called rotation, translation, expansion and axesion are designed. Adjusting measures of the transformations are mainly studied to keep the balance of exploration and exploitation. Convergence analysis is also discussed about the algorithm based on random search theory. In the meanwhile, to strengthen the search ability in high dimensional space, communication strategy is introduced into the basic algorithm and intermittent exchange is presented to prevent premature convergence. Finally, experiments are carried out for the algorithms. With 10 common benchmark unconstrained continuous functions used to test the performance, the results show that state transition algorithms are promising algorithms due to their good global search capability and convergence property when compared with some popular algorithms.Comment: 18 pages, 28 figure

Polarons in suspended carbon nanotubes

We prove theoretically the possibility of electric-field controlled polaron formation involving flexural (bending) modes in suspended carbon nanotubes. Upon increasing the field, the ground state of the system with a single extra electron undergoes a first order phase transition between an extended state and a localized polaron state. For a common experimental setup, the threshold electric field is only of order $\simeq 10^{-2}$ V/$\mu$m

A logic for n-dimensional hierarchical refinement

Hierarchical transition systems provide a popular mathematical structure to represent state-based software applications in which different layers of abstraction are represented by inter-related state machines. The decomposition of high level states into inner sub-states, and of their transitions into inner sub-transitions is common refinement procedure adopted in a number of specification formalisms. This paper introduces a hybrid modal logic for k-layered transition systems, its first-order standard translation, a notion of bisimulation, and a modal invariance result. Layered and hierarchical notions of refinement are also discussed in this setting.Comment: In Proceedings Refine'15, arXiv:1606.0134

An effective Hamiltonian approach for Donor-Bridge-Acceptor electronic transitions: Exploring the role of bath memory

We present here a formally exact model for electronic transitions between an initial (donor) and final (acceptor) states linked by an intermediate (bridge) state. Our model incorporates a common set of vibrational modes that are coupled to the donor, bridge, and acceptor states and serves as a dissipative bath that destroys quantum coherence between the donor and acceptor. Taking the memory time of the bath as a free parameter, we calculate transition rates for a heuristic 3-state/2 mode Hamiltonian system parameterized to represent the energetics and couplings in a typical organic photovoltaic system. Our results indicate that if the memory time of the bath is of the order of 10-100 fs, a two-state kinetic (i.e., incoherent hopping) model will grossly underestimate overall transition rate.Comment: 9 pages, 2 figure

High Q Cavity Induced Fluxon Bunching in Inductively Coupled Josephson Junctions

We consider fluxon dynamics in a stack of inductively coupled long Josephson junctions connected capacitively to a common resonant cavity at one of the boundaries. We study, through theoretical and numerical analysis, the possibility for the cavity to induce a transition from the energetically favored state of spatially separated shuttling fluxons in the different junctions to a high velocity, high energy state of identical fluxon modes.Comment: 8 pages, 5 figure