Artifact Removal Methods in EEG Recordings: A Review

To obtain the correct analysis of electroencephalogram (EEG) signals, non-physiological and physiological artifacts should be removed from EEG signals. This study aims to give an overview on the existing methodology for removing physiological artifacts, e.g., ocular, cardiac, and muscle artifacts. The datasets, simulation platforms, and performance measures of artifact removal methods in previous related research are summarized. The advantages and disadvantages of each technique are discussed, including regression method, filtering method, blind source separation (BSS), wavelet transform (WT), empirical mode decomposition (EMD), singular spectrum analysis (SSA), and independent vector analysis (IVA). Also, the applications of hybrid approaches are presented, including discrete wavelet transform - adaptive filtering method (DWT-AFM), DWT-BSS, EMD-BSS, singular spectrum analysis - adaptive noise canceler (SSA-ANC), SSA-BSS, and EMD-IVA. Finally, a comparative analysis for these existing methods is provided based on their performance and merits. The result shows that hybrid methods can remove the artifacts more effectively than individual methods

Methods for noninvasive localization of focal epileptic activity with magnetoencephalography

Magnetoencephalography (MEG) is a noninvasive brain signal acquisition technique that provides excellent temporal resolution and a whole-head coverage allowing the spatial mapping of sources. These characteristics make MEG an appropriate technique to localize the epileptogenic zone (EZ) in the preoperative evaluation of refractory epilepsy. Presurgical evaluation with MEG can guide the placement of intracranial EEG (iEEG), the current gold standard in the clinical practice, and even supply sufficient information for a surgical intervention without invasive recordings, reducing invasiveness, discomfort, and cost of the presurgical epilepsy diagnosis. However, MEG signals have low signal-to-noise ratio compared with iEEG and can sometimes be affected by noise that masks or distorts the brain activity. This may prevent the detection of interictal epileptiform discharges (IEDs) and high-frequency oscillations (HFOs), two important biomarkers used in the preoperative evaluation of epilepsy. In this thesis, the reduction of two kinds of interference is aimed to improve the signal-to-noise ratio of MEG signals: metallic artifacts mask the activity of IEDs; and the high-frequency noise, that masks HFO activity. Considering the large number of MEG channels and the long duration of the recordings, reducing noise and marking events manually is a time-consuming task. The algorithms presented in this thesis provide automatic solutions aimed at the reduction of interferences and the detection of HFOs. Firstly, a novel automatic BSS-based algorithm to reduce metallic interference is presented and validated using simulated and real MEG signals. Three methods are tested: AMUSE, a second-order BSS technique; and INFOMAX and FastICA, based on high-order statistics. The automatic detection algorithm exploits the known characteristics of metallic-related interferences. Results indicate that AMUSE performes better when recovering brain activity and allows an effective removal of artifactual components.Secondly, the influence of metallic artifact filtering using the developed algorithm is evaluated in the source localization of IEDs in patients with refractory focal epilepsy. A comparison between the resulting positions of equivalent current dipoles (ECDs) produced by IEDs is performed: without removing metallic interference, rejecting only channels with large metallic artifacts, and after BSS-based reduction. The results show that a significant reduction on dispersion is achieved using the BSS-based reduction procedure, yielding feasible locations of ECDs in contrast to the other approaches. Finally, an algorithm for the automatic detection of epileptic ripples in MEG using beamformer-based virtual sensors is developed. The automatic detection of ripples is performed using a two-stage approach. In the first step, beamforming is applied to the whole head to determine a region of interest. In the second step, the automatic detection of ripples is performed using the time-frequency characteristics of these oscillations. The performance of the algorithm is evaluated using simultaneous intracranial EEG recordings as gold standard.The novel approaches developed in this thesis allow an improved noninvasive detection and localization of interictal epileptic biomarkers, which can help in the delimitation of the epileptogenic zone and guide the placement of intracranial electrodes, or even to determine these areas without additional invasive recordings. As a consequence of this improved detection, and given that interictal biomarkers are much more frequent and easy to record than ictal episodes, the presurgical evaluation process can be more comfortable for the patient and in a more economic way.La magnetoencefalografía (MEG) es una técnica no invasiva de adquisición de señales cerebrales que proporciona una excelente resolución temporal y una cobertura total de la cabeza, permitiendo el mapeo espacial de las fuentes cerebrales. Estas características hacen del MEG una técnica apropiada para localizar la zona epileptogénica (EZ) en la evaluación preoperatoria de la epilepsia refractaria. La evaluación prequirúrgica con MEG puede orientar la colocación del EEG intracraneal (iEEG), el actual modelo de referencia en la práctica clínica, e incluso suministrar información suficiente para una intervención quirúrgica sin registros invasivos; reduciendo la invasividad, la incomodidad y el costo del diagnóstico de la epilepsia prequirúrgica. Sin embargo, las señales MEG tienen baja relación señal ruido en comparación con el iEEG pudiendo imposibilitar la detección de descargas epileptiformes interictales (IEDs) y oscilaciones de alta frecuencia (HFOs), dos importantes biomarcadores utilizados en la evaluación preoperatoria de la epilepsia.En esta tesis, la reducción de dos tipos de interferencia está dirigida a mejorar la relación señal-ruido de la señal MEG: los artefactos metálicos que enmascaran la actividad de las IEDs; y el ruido de alta frecuencia, que enmascara la actividad de las HFOs. Debido al gran número de canales MEG y la larga duración de los registros, tanto reducir el ruido como seleccionar los biomarcadores manualmente es una tarea que consume mucho tiempo. Los algoritmos presentados en esta tesis aportan soluciones automáticas dirigidas a la reducción de interferencias y la detección de HFOs. En primer lugar, se presenta y valida un nuevo algoritmo automático basado en BSS para reducir interferencias metálicas mediante señales simuladas y reales. Se prueban tres métodos: AMUSE, una técnica BSS de segundo orden; y INFOMAX y FastICA, basados en estadísticos de orden superior. El algoritmo de detección automático utiliza las características conocidas de la señal producida por la interferencia metálica. Los resultados indican que AMUSE recupera mejor la actividad cerebral y permite una eliminación efectiva de componentes artefactuales.Posteriormente, se evalúa la influencia del filtrado de artefactos metálicos en la localización de IEDs en pacientes con epilepsia focal refractaria. Se realiza una comparación entre las posiciones resultantes de dipolos de corriente equivalentes (ECDs) producidos por IEDs: sin eliminar interferencias metálicas, rechazando solamente canales con elevados artefactos metálicos y, por último, después de una reducción utilizando el algoritmo BSS desarrollado. Los resultados muestran que se logra una reducción significativa en la dispersión utilizando el procedimiento de reducción basado en BSS, lo que produce ubicaciones factibles de los dipolos en contraste con los otros enfoques.En segundo lugar, se desarrolla un algoritmo para la detección automática ripples epilépticos en MEG utilizando sensores virtuales basados en la técnica de beamformer. La detección de ripples se realiza mediante un enfoque en dos etapas. Primero, se determina el área de interés usando beamformer. Posteriormente, se realiza la detección automática de ripples utilizando las características en tiempo-frecuencia. El rendimiento del algoritmo se evalúa utilizando registros iEEG simultáneos.Los nuevos enfoques desarrollados en esta tesis permiten una detección no invasiva mejor de los biomarcadores interictales, que pueden ayudar a delimitar la zona epileptogénica y guiar la colocación de electrodos intracraneales, o incluso determinar estas áreas sin este tipo de registros. Como consecuencia de esta mejora en la detección, y dado que los biomarcadores interictales son mucho más frecuentes y fáciles de registrar que los episodios ictales, la evaluación prequirúrgica puede ser más cómoda y menos costosa para el paciente.Postprint (published version

Real-Time, Hardware Efficient Ocular Artifact Removal From Single Channel EEG data Using a Hybrid Algebraic and Wavelet Algorithm

Electroencephalography (EEG) is a promising technique to record brain activities in natural settings. EEG signal usually gets contaminated by Ocular Artifacts (OA), removal of which is critical for the feature extraction and classification. With the increasing interest in wearable technologies, single channel EEG systems are becoming more prevalent that often require real-time signal processing for immediate feedback. In this context, a new hybrid algorithm to detect OA and subsequently remove OA from single channel streaming EEG data is proposed here. The algorithm first detects the OA zones using Algebraic approach, and then removes artifact from the detected OA zones using Discrete Wavelet Transform (DWT) decomposition method. De-noising technique is applied only to the OA zone that minimizes interference to neural information outside of OA zone. The microcontroller hardware implemented hybrid OA removal algorithm demonstrated real-time execution with sufficient accuracy in both OA detection and removal. The performance evaluation was carried out qualitatively and quantitatively for 0.5 sec epoch in overlapping manner using time-frequency analysis, mean square coherence, Correlation Coefficient (CC) and Mutual Information statistics. Matlab implementation resulted in average CC of 0.3242 and average MI of 1.0042, while microcontroller implementation resulted in average CC of 0.4033 for all blinks. Successful implementation of OA removal from single channel real-time EEG data using the proposed algorithm shows promise for real-time feedabck applications of wearable EEG devices

Wearable Biosensors to Understand Construction Workers' Mental and Physical Stress

Occupational stress is defined as harmful physical and mental responses when job requirements are greater than a worker's capacity. Construction is one of the most stressful occupations because it involves physiologically and psychologically demanding tasks performed in a hazardous environment this stress can jeopardize construction safety, health, and productivity. Various instruments, such as surveys and interviews, have been used for measuring workers’ perceived mental and physical stress. However valuable, such instruments are limited by their invasiveness, which prevents them from being used for continuous stress monitoring. The recent advancement of wearable biosensors has opened a new door toward the non-invasive collection of a field worker’s physiological signals that can be used to assess their mental and physical status. Despite these advancements, challenges remain: acquiring physiological signals from wearable biosensors can be easily contaminated from diverse sources of signal noise. Further, the potential of these devices to assess field workers’ mental and physical status has not been examined in the naturalistic work environment. To address these issues, this research aims to propose and validate a comprehensive and efficient stress-measurement framework that recognizes workers mental and physical stress in a naturalistic environment. The focus of this research is on two wearable biosensors. First, a wearable EEG headset, which is a direct measurement of brain waves with the minimal time lag, but it is highly vulnerable to various artifacts. Second, a very convenient wristband-type biosensor, which may be used as a means for assessing both mental and physical stress, but there is a time lag between when subjects are exposed to stressors and when their physiological signals change. To achieve this goal, five interrelated and interdisciplinary studies were performed to; 1) acquire high-quality EEG signals from the job site; 2) assess construction workers’ emotion by measuring the valence and arousal level by analyzing the patterns of construction workers’ brainwaves; 3) recognize mental stress in the field based on brain activities by applying supervised-learning algorithms;4) recognize real-time mental stress by applying Online Multi-Task Learning (OMTL) algorithms; and 5) assess workers’ mental and physical stress using signals collected from a wristband biosensor. To examine the performance of the proposed framework, we collected physiological signals from 21 workers at five job sites. Results yielded a high of 80.13% mental stress-recognition accuracy using an EEG headset and 90.00% physical stress-recognition accuracy using a wristband sensor. These results are promising given that stress recognition with wired physiological devices within a controlled lab setting in the clinical domain has, at best, a similar level of accuracy. The proposed wearable biosensor-based, stress-recognition framework is expected to help us better understand workplace stressors and improve worker safety, health, and productivity through early detection and mitigation of stress at human-centered, smart and connected construction sites.PHDCivil EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttps://deepblue.lib.umich.edu/bitstream/2027.42/149965/1/hjebelli_1.pd

Volitional Control of Lower-limb Prosthesis with Vision-assisted Environmental Awareness

Early and reliable prediction of user’s intention to change locomotion mode or speed is critical for a smooth and natural lower limb prosthesis. Meanwhile, incorporation of explicit environmental feedback can facilitate context aware intelligent prosthesis which allows seamless operation in a variety of gait demands. This dissertation introduces environmental awareness through computer vision and enables early and accurate prediction of intention to start, stop or change speeds while walking. Electromyography (EMG), Electroencephalography (EEG), Inertial Measurement Unit (IMU), and Ground Reaction Force (GRF) sensors were used to predict intention to start, stop or increase walking speed. Furthermore, it was investigated whether external emotional music stimuli could enhance the predictive capability of intention prediction methodologies. Application of advanced machine learning and signal processing techniques on pre-movement EEG resulted in an intention prediction system with low latency, high sensitivity and low false positive detection. Affective analysis of EEG suggested that happy music stimuli significantly (

自然視条件下脳波計測の精度向上を可能にする眼球運動情報を用いた解析方法に関する研究

As the technique of electroencephalogram (EEG) developed for such many years, its application spreads and permeates into different areas, such like, clinical diagnosis, brain-computer interface, mental state estimation, and so on. Recently, using EEG as a tool for estimate people’s mental state and its extensional applications have jump into the limelight. These practical applications are urgently needed because the lack of subjectively estimating methods for the so called metal states, such as the concentration during study, the cognitive workload in driving, the calmness under mental training and so on. On the other hand, the application of EEG signals under daily life conditions especially when eye movements are totally without any constrains under a ‘fully free-view’ condition are obedient to the traditional ocular artifact suppression methods and how it meets the neuroscience standard has not been clearly expounded. This cause the ambiguities of explaining the obtain data and lead to susceptive results from data analysis. In our research, based on the basic idea of employing and extending EEG as the main tool for the estimation to mental state for daily life use, we confirmed the direction sensitivity of ocular artifacts induced by various types of eye movements and showed the most sensitive areas to the influence from it by multi zone-of-view experiment with standard neuroscience-targeted EEG devices. Enlightened from the results, we extended heuristic result on the use of more practical portable EEG devices. Besides, for a more realistic solution of the EEG based mental state estimation which is supposed to be applied for daily life environment, we studied the signal processing techniques of artifact suppression on low density electrode EEG and showed the importance of taking direction/eye position information into account when ocular artifact removal/suppression. In summary, this thesis has helped pave the practical way of using EEG signals toward the general use in daily life which has irregular eye movement patterns. We also pointed out the view-direction sensitivity of ocular artifact which helps the future studies to overcome the difficulties imposed on EEG applications by the free-view EEG tasks.九州工業大学博士学位論文 学位記番号:生工博甲第262号 学位授与年月日:平成28年3月26日1 Introduction|2 EEG measurements and ocular artifacts|3 Regression based solutions to ocular artifact suppression or removal in EEG|4 Measuring EEG with eye-tracking system|5 Direction and viewing area-sensitive influence of EOG artifacts revealed in the EEG topographic pattern analysis|6 Performance improvement of artifact removal with ocular information|7 Summary九州工業大学平成27年

Closed-loop approaches for innovative neuroprostheses

The goal of this thesis is to study new ways to interact with the nervous system in case of damage or pathology. In particular, I focused my effort towards the development of innovative, closed-loop stimulation protocols in various scenarios: in vitro, ex vivo, in vivo

The Electrophysiology of Resting State fMRI Networks

Traditional research in neuroscience has studied the topography of specific brain functions largely by presenting stimuli or imposing tasks and measuring evoked brain activity. This paradigm has dominated neuroscience for 50 years. Recently, investigations of brain activity in the resting state, most frequently using functional magnetic resonance imaging (fMRI), have revealed spontaneous correlations within widely distributed brain regions known as resting state networks (RSNs). Variability in RSNs across individuals has found to systematically relate to numerous diseases as well as differences in cognitive performance within specific domains. However, the relationship between spontaneous fMRI activity and the underlying neurophysiology is not well understood. This thesis aims to combine invasive electrophysiology and resting state fMRI in human subjects to better understand the nature of spontaneous brain activity. First, we establish an approach to precisely coregister intra-cranial electrodes to fMRI data (Chapter 2). We then created a novel machine learning approach to define resting state networks in individual subjects (Chapter 3). This approach is validated with cortical stimulation in clinical electrocorticography (ECoG) patients (Chapter 4). Spontaneous ECoG data are then analyzed with respect to fMRI time-series and fMRI-defined RSNs in order to illustrate novel ECoG correlates of fMRI for both local field potentials and band-limited power (BLP) envelopes (Chapter 5). In Chapter 6, we show that the spectral specificity of these resting state ECoG correlates link classic brain rhythms with large-scale functional domains. Finally, in Chapter 7 we show that the frequencies and topographies of spontaneous ECoG correlations specifically recapitulate the spectral and spatial structure of task responses within individual subjects