Scaling Survival Analysis in Healthcare with Federated Survival Forests: A Comparative Study on Heart Failure and Breast Cancer Genomics

Survival analysis is a fundamental tool in medicine, modeling the time until an event of interest occurs in a population. However, in real-world applications, survival data are often incomplete, censored, distributed, and confidential, especially in healthcare settings where privacy is critical. The scarcity of data can severely limit the scalability of survival models to distributed applications that rely on large data pools. Federated learning is a promising technique that enables machine learning models to be trained on multiple datasets without compromising user privacy, making it particularly well-suited for addressing the challenges of survival data and large-scale survival applications. Despite significant developments in federated learning for classification and regression, many directions remain unexplored in the context of survival analysis. In this work, we propose an extension of the Federated Survival Forest algorithm, called FedSurF++. This federated ensemble method constructs random survival forests in heterogeneous federations. Specifically, we investigate several new tree sampling methods from client forests and compare the results with state-of-the-art survival models based on neural networks. The key advantage of FedSurF++ is its ability to achieve comparable performance to existing methods while requiring only a single communication round to complete. The extensive empirical investigation results in a significant improvement from the algorithmic and privacy preservation perspectives, making the original FedSurF algorithm more efficient, robust, and private. We also present results on two real-world datasets demonstrating the success of FedSurF++ in real-world healthcare studies. Our results underscore the potential of FedSurF++ to improve the scalability and effectiveness of survival analysis in distributed settings while preserving user privacy

Client Selection for Federated Learning with Heterogeneous Resources in Mobile Edge

We envision a mobile edge computing (MEC) framework for machine learning (ML) technologies, which leverages distributed client data and computation resources for training high-performance ML models while preserving client privacy. Toward this future goal, this work aims to extend Federated Learning (FL), a decentralized learning framework that enables privacy-preserving training of models, to work with heterogeneous clients in a practical cellular network. The FL protocol iteratively asks random clients to download a trainable model from a server, update it with own data, and upload the updated model to the server, while asking the server to aggregate multiple client updates to further improve the model. While clients in this protocol are free from disclosing own private data, the overall training process can become inefficient when some clients are with limited computational resources (i.e. requiring longer update time) or under poor wireless channel conditions (longer upload time). Our new FL protocol, which we refer to as FedCS, mitigates this problem and performs FL efficiently while actively managing clients based on their resource conditions. Specifically, FedCS solves a client selection problem with resource constraints, which allows the server to aggregate as many client updates as possible and to accelerate performance improvement in ML models. We conducted an experimental evaluation using publicly-available large-scale image datasets to train deep neural networks on MEC environment simulations. The experimental results show that FedCS is able to complete its training process in a significantly shorter time compared to the original FL protocol

Harnessing spatial homogeneity of neuroimaging data: patch individual filter layers for CNNs

Neuroimaging data, e.g. obtained from magnetic resonance imaging (MRI), is comparably homogeneous due to (1) the uniform structure of the brain and (2) additional efforts to spatially normalize the data to a standard template using linear and non-linear transformations. Convolutional neural networks (CNNs), in contrast, have been specifically designed for highly heterogeneous data, such as natural images, by sliding convolutional filters over different positions in an image. Here, we suggest a new CNN architecture that combines the idea of hierarchical abstraction in neural networks with a prior on the spatial homogeneity of neuroimaging data: Whereas early layers are trained globally using standard convolutional layers, we introduce for higher, more abstract layers patch individual filters (PIF). By learning filters in individual image regions (patches) without sharing weights, PIF layers can learn abstract features faster and with fewer samples. We thoroughly evaluated PIF layers for three different tasks and data sets, namely sex classification on UK Biobank data, Alzheimer's disease detection on ADNI data and multiple sclerosis detection on private hospital data. We demonstrate that CNNs using PIF layers result in higher accuracies, especially in low sample size settings, and need fewer training epochs for convergence. To the best of our knowledge, this is the first study which introduces a prior on brain MRI for CNN learning

Adversarial Attack and Defense on Graph Data: A Survey

Deep neural networks (DNNs) have been widely applied to various applications including image classification, text generation, audio recognition, and graph data analysis. However, recent studies have shown that DNNs are vulnerable to adversarial attacks. Though there are several works studying adversarial attack and defense strategies on domains such as images and natural language processing, it is still difficult to directly transfer the learned knowledge to graph structure data due to its representation challenges. Given the importance of graph analysis, an increasing number of works start to analyze the robustness of machine learning models on graph data. Nevertheless, current studies considering adversarial behaviors on graph data usually focus on specific types of attacks with certain assumptions. In addition, each work proposes its own mathematical formulation which makes the comparison among different methods difficult. Therefore, in this paper, we aim to survey existing adversarial learning strategies on graph data and first provide a unified formulation for adversarial learning on graph data which covers most adversarial learning studies on graph. Moreover, we also compare different attacks and defenses on graph data and discuss their corresponding contributions and limitations. In this work, we systemically organize the considered works based on the features of each topic. This survey not only serves as a reference for the research community, but also brings a clear image researchers outside this research domain. Besides, we also create an online resource and keep updating the relevant papers during the last two years. More details of the comparisons of various studies based on this survey are open-sourced at https://github.com/YingtongDou/graph-adversarial-learning-literature.Comment: In submission to Journal. For more open-source and up-to-date information, please check our Github repository: https://github.com/YingtongDou/graph-adversarial-learning-literatur

Federated Neural Architecture Search

To preserve user privacy while enabling mobile intelligence, techniques have been proposed to train deep neural networks on decentralized data. However, training over decentralized data makes the design of neural architecture quite difficult as it already was. Such difficulty is further amplified when designing and deploying different neural architectures for heterogeneous mobile platforms. In this work, we propose an automatic neural architecture search into the decentralized training, as a new DNN training paradigm called Federated Neural Architecture Search, namely federated NAS. To deal with the primary challenge of limited on-client computational and communication resources, we present FedNAS, a highly optimized framework for efficient federated NAS. FedNAS fully exploits the key opportunity of insufficient model candidate re-training during the architecture search process, and incorporates three key optimizations: parallel candidates training on partial clients, early dropping candidates with inferior performance, and dynamic round numbers. Tested on large-scale datasets and typical CNN architectures, FedNAS achieves comparable model accuracy as state-of-the-art NAS algorithm that trains models with centralized data, and also reduces the client cost by up to two orders of magnitude compared to a straightforward design of federated NAS