4 research outputs found
Cavity Matchings, Label Compressions, and Unrooted Evolutionary Trees
We present an algorithm for computing a maximum agreement subtree of two
unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with
unbounded degrees, matching the best known time complexity for the rooted case.
Our algorithm allows the input trees to be mixed trees, i.e., trees that may
contain directed and undirected edges at the same time. Our algorithm adopts a
recursive strategy exploiting a technique called label compression. The
backbone of this technique is an algorithm that computes the maximum weight
matchings over many subgraphs of a bipartite graph as fast as it takes to
compute a single matching
A Decomposition Theorem for Maximum Weight Bipartite Matchings
Let G be a bipartite graph with positive integer weights on the edges and
without isolated nodes. Let n, N and W be the node count, the largest edge
weight and the total weight of G. Let k(x,y) be log(x)/log(x^2/y). We present a
new decomposition theorem for maximum weight bipartite matchings and use it to
design an O(sqrt(n)W/k(n,W/N))-time algorithm for computing a maximum weight
matching of G. This algorithm bridges a long-standing gap between the best
known time complexity of computing a maximum weight matching and that of
computing a maximum cardinality matching. Given G and a maximum weight matching
of G, we can further compute the weight of a maximum weight matching of G-{u}
for all nodes u in O(W) time.Comment: The journal version will appear in SIAM Journal on Computing. The
conference version appeared in ESA 199