5,975 research outputs found

    Integrating expert-based objectivist and nonexpert-based subjectivist paradigms in landscape assessment

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    This thesis explores the integration of objective and subjective measures of landscape aesthetics, particularly focusing on crowdsourced geo-information. It addresses the increasing importance of considering public perceptions in national landscape governance, in line with the European Landscape Convention's emphasis on public involvement. Despite this, national landscape assessments often remain expert-centric and top-down, facing challenges in resource constraints and limited public engagement. The thesis leverages Web 2.0 technologies and crowdsourced geographic information, examining correlations between expert-based metrics of landscape quality and public perceptions. The Scenic-Or-Not initiative for Great Britain, GIS-based Wildness spatial layers, and LANDMAP dataset for Wales serve as key datasets for analysis. The research investigates the relationships between objective measures of landscape wildness quality and subjective measures of aesthetics. Multiscale geographically weighted regression (MGWR) reveals significant correlations, with different wildness components exhibiting varying degrees of association. The study suggests the feasibility of incorporating wildness and scenicness measures into formal landscape aesthetic assessments. Comparing expert and public perceptions, the research identifies preferences for water-related landforms and variations in upland and lowland typologies. The study emphasizes the agreement between experts and non-experts on extreme scenic perceptions but notes discrepancies in mid-spectrum landscapes. To overcome limitations in systematic landscape evaluations, an integrative approach is proposed. Utilizing XGBoost models, the research predicts spatial patterns of landscape aesthetics across Great Britain, based on the Scenic-Or-Not initiatives, Wildness spatial layers, and LANDMAP data. The models achieve comparable accuracy to traditional statistical models, offering insights for Landscape Character Assessment practices and policy decisions. While acknowledging data limitations and biases in crowdsourcing, the thesis discusses the necessity of an aggregation strategy to manage computational challenges. Methodological considerations include addressing the modifiable areal unit problem (MAUP) associated with aggregating point-based observations. The thesis comprises three studies published or submitted for publication, each contributing to the understanding of the relationship between objective and subjective measures of landscape aesthetics. The concluding chapter discusses the limitations of data and methods, providing a comprehensive overview of the research

    Deep learning analysis of plasma emissions: A potential system for monitoring methane and hydrogen in the pyrolysis processes

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    The estimation of methane and hydrogen production as output from a pyrolysis reaction is paramount to monitor the process and optimize its parameters. In this study, we propose a novel experimental approach for monitoring methane pyrolysis reactions aimed at hydrogen production by quantifying methane and hydrogen output from the system. While we appreciate the complexity of molecular outputs from methane hydrolysis process, our primary approach is a simplified model considering detection of hydrogen and methane only which involves three steps: continuous gas sampling, feeding of the sample into an argon plasma, and employing deep learning model to estimate of the methane and hydrogen concentration from the plasma spectral emission. While our model exhibits promising performance, there is still significant room for improvement in accuracy, especially regarding hydrogen quantification in the presence of methane and other hydrogen bearing molecules. These findings present exciting prospects, and we will discuss future steps necessary to advance this concept, which is currently in its early stages of development

    High-accuracy prediction of colorectal cancer chemotherapy efficacy using machine learning applied to gene expression data

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    Introduction: FOLFOX and FOLFIRI chemotherapy are considered standard first-line treatment options for colorectal cancer (CRC). However, the criteria for selecting the appropriate treatments have not been thoroughly analyzed.Methods: A newly developed machine learning model was applied on several gene expression data from the public repository GEO database to identify molecular signatures predictive of efficacy of 5-FU based combination chemotherapy (FOLFOX and FOLFIRI) in patients with CRC. The model was trained using 5-fold cross validation and multiple feature selection methods including LASSO and VarSelRF methods. Random Forest and support vector machine classifiers were applied to evaluate the performance of the models.Results and Discussion: For the CRC GEO dataset samples from patients who received either FOLFOX or FOLFIRI, validation and test sets were >90% correctly classified (accuracy), with specificity and sensitivity ranging between 85%-95%. In the datasets used from the GEO database, 28.6% of patients who failed the treatment therapy they received are predicted to benefit from the alternative treatment. Analysis of the gene signature suggests the mechanistic difference between colorectal cancers that respond and those that do not respond to FOLFOX and FOLFIRI. Application of this machine learning approach could lead to improvements in treatment outcomes for patients with CRC and other cancers after additional appropriate clinical validation

    Neuromodulatory effects on early visual signal processing

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    Understanding how the brain processes information and generates simple to complex behavior constitutes one of the core objectives in systems neuroscience. However, when studying different neural circuits, their dynamics and interactions researchers often assume fixed connectivity, overlooking a crucial factor - the effect of neuromodulators. Neuromodulators can modulate circuit activity depending on several aspects, such as different brain states or sensory contexts. Therefore, considering the modulatory effects of neuromodulators on the functionality of neural circuits is an indispensable step towards a more complete picture of the brain’s ability to process information. Generally, this issue affects all neural systems; hence this thesis tries to address this with an experimental and computational approach to resolve neuromodulatory effects on cell type-level in a well-define system, the mouse retina. In the first study, we established and applied a machine-learning-based classification algorithm to identify individual functional retinal ganglion cell types, which enabled detailed cell type-resolved analyses. We applied the classifier to newly acquired data of light-evoked retinal ganglion cell responses and successfully identified their functional types. Here, the cell type-resolved analysis revealed that a particular principle of efficient coding applies to all types in a similar way. In a second study, we focused on the issue of inter-experimental variability that can occur during the process of pooling datasets. As a result, further downstream analyses may be complicated by the subtle variations between the individual datasets. To tackle this, we proposed a theoretical framework based on an adversarial autoencoder with the objective to remove inter-experimental variability from the pooled dataset, while preserving the underlying biological signal of interest. In the last study of this thesis, we investigated the functional effects of the neuromodulator nitric oxide on the retinal output signal. To this end, we used our previously developed retinal ganglion cell type classifier to unravel type-specific effects and established a paired recording protocol to account for type-specific time-dependent effects. We found that certain retinal ganglion cell types showed adaptational type-specific changes and that nitric oxide had a distinct modulation of a particular group of retinal ganglion cells. In summary, I first present several experimental and computational methods that allow to study functional neuromodulatory effects on the retinal output signal in a cell type-resolved manner and, second, use these tools to demonstrate their feasibility to study the neuromodulator nitric oxide

    Long-term land cover changes assessment in the Jiului Valley mining basin in Romania

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    Introduction: Highlighting and assessing land cover changes in a heterogeneous landscape, such as those with surface mining activities, allows for understanding the dynamics and status of the analyzed area. This paper focuses on the long-term land cover changes in the Jiului Valley, the largest mining basin in Romania, using Landsat temporal image series from 1988 to 2017.Methods: The images were classified using the supervised Support Vector Machine (SVM) algorithm incorporating four kernel functions and two common algorithms (Maximum Likelihood Classification - MLC) and (Minimum Distance - MD). Seven major land cover classes have been identified: forest, pasture, agricultural land, built-up areas, mined areas, dump sites, and water bodies. The accuracy of every classification algorithm was evaluated through independent validation, and the differences in accuracy were subsequently analyzed. Using the best-performing SVM-RBF algorithm, classified maps of the study area were developed and used for assessing land cover changes by post-classification comparison (PCC).Results and discussions: All three algorithms displayed an overall accuracy, ranging from 76.56% to 90.68%. The SVM algorithms outperformed MLC by 4.87%–8.80% and MD by 6.82%–10.67%. During the studied period, changes occurred within analyzed classes, both directly and indirectly: forest, built-up areas, mined areas, and water bodies experienced increases, whereas pasture, agricultural land, and dump areas saw declines. The most notable changes between 1988 and 2017 were observed in built-up and dump areas: the built-up areas increased by 110.7%, while the dump sites decreased by 53.0%. The mined class showed an average growth of 6.5%. By highlighting and mapping long-term land cover changes in this area, along with their underlying causes, it became possible to analyze the impact of land management and usage on sustainable development and conservation effort over time

    Brittle-viscous deformation cycles at the base of the seismogenic zone in the continental crust

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    The main goal of the study was to determine the dynamical cycle of ductile-brittle deformation and to characterise the fluid pathways at different scales of a brittle-viscous fault zone active at the base of the seismogenic crust. Object of analysis are samples from the sinistral strike-slip fault zone BFZ045 from Olkiluoto (SW Finland), located at the site of a deep geological repository for nuclear waste. Combined microstructural analysis, electron backscatter diffraction (EBSD), and mineral chemistry were applied to reconstruct the variations in pressure, temperature, fluid pressure, and differential stress that mediated deformation and strain localization along BFZ045 across the BDTZ. Ductile deformation took place at 400-500° C and 3-4 kbar, and recrystallized grain size piezometry for quartz document a progressive increase in differential stress during mylonitization, from ca. 50 MPa to ca. 120 MPa. The increase in differential stress was localised towards the shear zone center, which was eventually overprinted by brittle deformation in a narrowing shear zone. Cataclastic deformation occurred under lower T conditions down to T ≄ 320° C and was not further overprinted by mylonitic creep. Porosity estimates were obtained through the combination of x-ray micro-computed tomography (”CT), mercury intrusion porosimetry, He pycnometry, and microstructural analysis. Low porosity values (0.8-4.4%) for different rock type, 2-20 ”m pore size, representative of pore connectivity, and microstructural observation suggest a relationship to a dynamical cycle of fracturing and sealing mechanism, mostly controlled by ductile deformation. Similarly, the observation from fracture orientation analysis indicates that the mylonitic precursor of BFZ045 played an important role in the localization of the brittle deformation. This thesis highlights that the ductile-brittle deformation cycle in BFZ045 was controlled by transient oscillations in fluid pressure in a narrowing shear zone deforming at progressively higher differential stress during cooling

    Towards Neuromorphic Gradient Descent: Exact Gradients and Low-Variance Online Estimates for Spiking Neural Networks

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    Spiking Neural Networks (SNNs) are biologically-plausible models that can run on low-powered non-Von Neumann neuromorphic hardware, positioning them as promising alternatives to conventional Deep Neural Networks (DNNs) for energy-efficient edge computing and robotics. Over the past few years, the Gradient Descent (GD) and Error Backpropagation (BP) algorithms used in DNNs have inspired various training methods for SNNs. However, the non-local and the reverse nature of BP, combined with the inherent non-differentiability of spikes, represent fundamental obstacles to computing gradients with SNNs directly on neuromorphic hardware. Therefore, novel approaches are required to overcome the limitations of GD and BP and enable online gradient computation on neuromorphic hardware. In this thesis, I address the limitations of GD and BP with SNNs by proposing three algorithms. First, I extend a recent method that computes exact gradients with temporally-coded SNNs by relaxing the firing constraint of temporal coding and allowing multiple spikes per neuron. My proposed method generalizes the computation of exact gradients with SNNs and enhances the tradeoffs between performance and various other aspects of spiking neurons. Next, I introduce a novel alternative to BP that computes low-variance gradient estimates in a local and online manner. Compared to other alternatives to BP, the proposed method demonstrates an improved convergence rate and increased performance with DNNs. Finally, I combine these two methods and propose an algorithm that estimates gradients with SNNs in a manner that is compatible with the constraints of neuromorphic hardware. My empirical results demonstrate the effectiveness of the resulting algorithm in training SNNs without performing BP

    Efficient Visual Computing with Camera RAW Snapshots

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    Conventional cameras capture image irradiance (RAW) on a sensor and convert it to RGB images using an image signal processor (ISP). The images can then be used for photography or visual computing tasks in a variety of applications, such as public safety surveillance and autonomous driving. One can argue that since RAW images contain all the captured information, the conversion of RAW to RGB using an ISP is not necessary for visual computing. In this paper, we propose a novel ρ-Vision framework to perform high-level semantic understanding and low-level compression using RAW images without the ISP subsystem used for decades. Considering the scarcity of available RAW image datasets, we first develop an unpaired CycleR2R network based on unsupervised CycleGAN to train modular unrolled ISP and inverse ISP (invISP) models using unpaired RAW and RGB images. We can then flexibly generate simulated RAW images (simRAW) using any existing RGB image dataset and finetune different models originally trained in the RGB domain to process real-world camera RAW images. We demonstrate object detection and image compression capabilities in RAW-domain using RAW-domain YOLOv3 and RAW image compressor (RIC) on camera snapshots. Quantitative results reveal that RAW-domain task inference provides better detection accuracy and compression efficiency compared to that in the RGB domain. Furthermore, the proposed ρ-Vision generalizes across various camera sensors and different task-specific models. An added benefit of employing the ρ-Vision is the elimination of the need for ISP, leading to potential reductions in computations and processing times

    Neuroimaging investigations of cortical specialisation for different types of semantic knowledge

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    Embodied theories proposed that semantic knowledge is grounded in motor and perceptual experiences. This leads to two questions: (1) whether the neural underpinnings of perception are also necessary for semantic cognition; (2) how do biases towards different sensorimotor experiences cause brain regions to specialise for particular types of semantic information. This thesis tackles these questions in a series of neuroimaging and behavioural investigations. Regarding question 1, strong embodiment theory holds that semantic representation is reenactment of corresponding experiences, and brain regions for perception are necessary for comprehending modality-specific concepts. However, the weak embodiment view argues that reenactment may not be necessary, and areas near to perceiving regions may be sufficient to support semantic representation. In the particular case of motion concepts, lateral occipital temporal cortex (LOTC) has been long identified as an important area, but the roles of its different subregions are still uncertain. Chapter 3 examined how different parts of LOTC reacted to written descriptions of motion and static events, using multiple analysis methods. A series of anterior to posterior sub-regions were analyzed through univariate, multivariate pattern analysis (MVPA), and psychophysical interaction (PPI) analyses. MVPA revealed strongest decoding effects for motion vs. static events in the posterior parts of LOTC, including both visual motion area (V5) and posterior middle temporal gyrus (pMTG). In contrast, only the middle portion of LOTC showed increased activation for motion sentences in univariate analyses. PPI analyses showed increased functional connectivity between posterior LOTC and the multiple demand network for motion events. These findings suggest that posterior LOTC, which overlapped with the motion perception V5 region, is selectively involved in comprehending motion events, while the anterior part of LOTC contributes to general semantic processing. Regarding question 2, the hub-and-spoke theory suggests that anterior temporal lobe (ATL) acts as a hub, using inputs from modality-specific regions to construct multimodal concepts. However, some researchers propose temporal parietal cortex (TPC) as an additional hub, specialised in processing and integrating interaction and contextual information (e.g., for actions and locations). These hypotheses are summarized as the "dual-hub theory" and different aspects of this theory were investigated in in Chapters 4 and 5. Chapter 4 focuses on taxonomic and thematic relations. Taxonomic relations (or categorical relations) occur when two concepts belong to the same category (e.g., ‘dog’ and ‘wolf’ are both canines). In contrast, thematic relations (or associative relations) refer to situations that two concepts co-occur in events or scenes (e.g., ‘dog’ and ‘bone’), focusing on the interaction or association between concepts. Some studies have indicated ATL specialization for taxonomic relations and TPC specialization for thematic relations, but others have reported inconsistent or even converse results. Thus Chapter 4 first conducted an activation likelihood estimation (ALE) meta-analysis of neuroimaging studies contrasting taxonomic and thematic relations. This found that thematic relations reliably engage action and location processing regions (left pMTG and SMG), while taxonomic relations only showed consistent effects in the right occipital lobe. A primed semantic judgement task was then used to test the dual-hub theory’s prediction that taxonomic relations are heavily reliant on colour and shape knowledge, while thematic relations rely on action and location knowledge. This behavioural experiment revealed that action or location priming facilitated thematic relation processing, but colour and shape did not lead to priming effects for taxonomic relations. This indicates that thematic relations rely more on action and location knowledge, which may explain why the preferentially engage TPC, whereas taxonomic relations are not specifically linked to shape and colour features. This may explain why they did not preferentially engage left ATL. Chapter 5 concentrates on event and object concepts. Previous studies suggest ATL specialization for coding similarity of objects’ semantics, and angular gyrus (AG) specialization for sentence and event structure representation. In addition, in neuroimaging studies, event semantics are usually investigated using complex temporally extended stimuli, unlike than the single-concept stimuli used to investigate object semantics. Thus chapter 5 used representational similarity analysis (RSA), univariate analysis, and PPI analysis to explore neural activation patterns for event and object concepts presented as static images. Bilateral AGs encoded semantic similarity for event concepts, with the left AG also coding object similarity. Bilateral ATLs encoded semantic similarity for object concepts but also for events. Left ATL exhibited stronger coding for events than objects. PPI analysis revealed stronger connections between left ATL and right pMTG, and between right AG and bilateral inferior temporal gyrus (ITG) and middle occipital gyrus, for event concepts compared to object concepts. Consistent with the meta-analysis in chapter 4, the results in chapter 5 support the idea of partial specialization in AG for event semantics but do not support ATL specialization for object semantics. In fact, both the meta-analysis and chapter 5 findings suggest greater ATL involvement in coding objects' associations compared to their similarity. To conclude, the thesis provides support for the idea that perceptual brain regions are engaged in conceptual processing, in the case of motion concepts. It also provides evidence for a specialised role for TPC regions in processing thematic relations (pMTG) and event concepts (AG). There was mixed evidence for specialisation within the ATLs and this remains an important target for future research

    Robust mitigation of EOVs using multivariate nonlinear regression within a vibration-based SHM methodology

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    A significant issue that has plagued data-driven Vibration-based Structural Health Monitoring (VSHM) is the mitigation of Environmental and Operational Variations (EOVs). The Damage Sensitive Features (DSFs) that are obtained from the vibration response of the structure are influenced by EOVs. Regression analysis, such as multivariate nonlinear regression, can be used to create relationships between Environmental and Operational Parameters (EOPs) and the DSFs, with EOV-insensitive DSFs created by taking the regression residuals. Inherent issues, originating from nuances in their design, exist within the design of the regression models, following from the overall uncertainty and redundancy in predictors and explained variables, leading to poor performance. To overcome this, a comprehensive nonlinear stepwise regression methodology has been developed to scour the regression models of as much uncertainty as possible. The proposed methodology addresses a number of crucial ideas: removing co nonlinear variables, identifying the most influential EOPs, facilitating the selection of compact regression bases and determining which DSFs should be regressed. Robust DSFs are created by combining non-regressed DSFs with critically thought-out regressed DSFs. Ultimately, reducing the uncertainty within the models will lead to more confidence in the decision making within a VSHM methodology
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